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[183025_s_at]

Description C34G6.7 /REP_DB=WormBase Gene ID /WP=CE08579 /TR=O01498 /GB=AAB52480.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 87      6grp_total > 96      4grp_total > 16      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 550
1 2 3 4 range
A 857.8
(-3)
P 		984.3
(-1.6)
P 		1089.6
(-0.5)
P 		1408.2
(3)
P 		550
B 881.5
(-3)
P 		1008.9
(-1.2)
P 		1010.4
(-1.2)
P 		1302
(3)
P 		421
C 927.8
(-3)
P 		1011.6
(-1.5)
P 		1024.6
(-1.3)
P 		1267.3
(3)
P 		340
avr 889
(-3) 		1001.6
(-1.5) 		1041.5
(-0.9) 		1325.8
(3) 		437

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 688
1 2 3 4 5 6 range
A 946.1
(-2.4)
P 		1004.6
(-1.8)
P 		884
(-3)
P 		1107.6
(-0.8)
P 		1294.2
(1)
P 		1506.9
(3)
P 		623
B 881.1
(-2.7)
P 		857.7
(-3)
P 		907.4
(-2.5)
P 		1148.8
(0.2)
P 		1266.7
(1.5)
P 		1403.4
(3)
P 		546
C 818.6
(-3)
P 		865
(-2.6)
P 		1048.1
(-0.8)
P 		1107.6
(-0.2)
P 		1282
(1.4)
P 		1443.6
(3)
P 		625
avr 881.9
(-3) 		909.1
(-2.7) 		946.5
(-2.3) 		1121.3
(-0.5) 		1281
(1.2) 		1451.3
(3) 		569
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 312.3
(3)
P 		213.7
(-2.6)
P 		284.9
(1.5)
P 		206.1
(-3)
P 		106
B 281.1
(3)
P 		249.2
(-1.1)
P 		234.1
(-3)
P 		277.5
(2.5)
P 		47
C 307.1
(0.9)
P 		290.8
(0.2)
P 		357.1
(3)
P 		213.7
(-3)
P 		143
avr 300.2
(3) 		251.2
(-1.3) 		292
(2.3) 		232.4
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 174.4
(-3)
P 		357.3
(2.1)
P 		192.5
(-2.5)
P 		280.9
(-0)
P 		390.5
(3)
P 		366.9
(2.3)
P 		216
B 306.6
(-1.3)
P 		285.5
(-1.7)
P 		220.3
(-3)
P 		304.3
(-1.3)
P 		514.6
(2.8)
P 		523.3
(3)
P 		303
C 303.4
(-1.1)
P 		263.9
(-2.1)
P 		266.8
(-2)
P 		222.7
(-3)
P 		414.9
(1.4)
P 		483.2
(3)
P 		261
avr 261.5
(-2.1) 		302.2
(-1) 		226.5
(-3) 		269.3
(-1.9) 		440
(2.5) 		457.8
(3) 		231
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183025_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.335
Sequence Type Exemplar sequence
Representative Public ID C34G6.7 NCBI
Target Description C34G6.7 /REP_DB=WormBase Gene ID /WP=CE08579 /TR=O01498 /GB=AAB52480.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182013(11), NM_059309(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182013 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-19) (pqn-19) mRNA, complete cds. 11/11 None
NM_059309 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-19) (pqn-19) mRNA, complete cds. 11/11 None
SNAP00000014378 ENSEMBL cdna:SNAP chromosome:CEL140:I:5910398:5912445:-1 11/11 None
GENEFINDER00000014385 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5910398:5912445:-1 11/11 None
C34G6.7a ENSEMBL cdna:known chromosome:CEL140:I:5910238:5912775:-1 gene:C34G6.7 11/11 None
C34G6.7b.1 ENSEMBL cdna:known chromosome:CEL140:I:5910249:5912825:-1 gene:C34G6.7 11/11 None
C34G6.7b.2 ENSEMBL cdna:known chromosome:CEL140:I:5910651:5912463:-1 gene:C34G6.7 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5910397-5912445(-) 100.0 100.0
Public Domain and Genome References
Ensembl C34G6.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN84851 Prion-like-(q/n-rich)-domain-bearing protein protein 19, isoform b [Caenorhabditis elegans] ref|NP_871813.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-19) [Caenorhabditis elegans] 0.0
blast AAB52480 Prion-like-(q/n-rich)-domain-bearing protein protein 19, isoform a [Caenorhabditis elegans] ref|NP_491710.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-19) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001452 EMBL-EBI SH3 1.1E-19
Pfam IPR002014 EMBL-EBI VHS 1.9E-62
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 0.027
Pfam IPR001452 EMBL-EBI SH3 1.1E-19
Pfam IPR002014 EMBL-EBI VHS 5.7E-65
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 0.027
Sequence
Target Sequence 
>C. ELEGANS:183025_S_AT
agcaatccccactggtggactggtcgtattggtacccaacagggacttttcccatccagc
ttcgttactaatcaactcgatgatctaaaatcaaaagagacggattcatcacagaaagcc
ccagaagttgtagcctcaattaatgaagcaatccttgttcgttgtcttcaagtactccat
gaatgtgatcctaccggtgaacgacaggatccagaggatttggcccaactagaagccgcc
tcgtatgctcaaggaaatctcattgatgcacatttggctagtattgatcgacagagcaac
tctctagcacaaatcgatgtggctattcgtgatgtgctcgcactttatgatgatgcgatt
cagaagggaggatttcagcatcaaagtcaaggaatgtaccaacaaccaatgcaacagtac
aactatcagcaaccaccaaaccgagcatattacccacctaccggtcctgtccaacaacag
cagccacaacaatatcctccacaacactatccggctcctggagcacaaccacagtacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAATCCCCACTGGTGGACTGGTC 190 77 742 Antisense
GGACTGGTCGTATTGGTACCCAACA 512 517 758 Antisense
ATCCAGCTTCGTTACTAATCAACTC 392 39 795 Antisense
GAAAGCCCCAGAAGTTGTAGCCTCA 545 357 855 Antisense
AAGCAATCCTTGTTCGTTGTCTTCA 603 151 887 Antisense
GAATGTGATCCTACCGGTGAACGAC 117 333 922 Antisense
GATTTGGCCCAACTAGAAGCCGCCT 51 369 958 Antisense
GCCGCCTCGTATGCTCAAGGAAATC 575 285 976 Antisense
GCAACTCTCTAGCACAAATCGATGT 372 319 1037 Antisense
GTGGCTATTCGTGATGTGCTCGCAC 466 491 1060 Antisense
CTCCTGGAGCACAACCACAGTACGC 236 235 1256 Antisense
Sequence Source Affymetrix Proprietary Database