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[183024_at]

Description R02F2.4 /REP_DB=WormBase Gene ID /WP=CE00685 /TR=Q21650 /GB=AAA50720.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 06      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 46.8
(3)
A 		16.1
(-2)
A 		10
(-3)
A 		38.5
(1.6)
A 		37
B 57.5
(-0.1)
A 		11.4
(-3)
A 		36.4
(-1.4)
A 		107.7
(3)
A 		96
C 18.3
(-1.2)
A 		38
(2.4)
A 		41.5
(3)
A 		8.3
(-3)
A 		33
avr 40.9
(0.9) 		21.8
(-3) 		29.3
(-1.5) 		51.5
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 719
1 2 3 4 5 6 range
A 18.9
(-3)
A 		29.6
(-2.9)
A 		92.7
(-2.2)
A 		97.5
(-2.1)
P 		350.1
(0.7)
P 		556.3
(3)
P 		537
B 30.3
(-2.9)
A 		48
(-2.7)
A 		18
(-3)
A 		65.2
(-2.5)
A 		338.6
(0.5)
P 		562.3
(3)
P 		544
C 10.7
(-3)
A 		50.6
(-2.7)
A 		65.6
(-2.5)
A 		130
(-2)
A 		238.2
(-1.1)
P 		730.1
(3)
P 		719
avr 20
(-3) 		42.7
(-2.8) 		58.8
(-2.6) 		97.6
(-2.2) 		309
(-0.1) 		616.2
(3) 		596
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 17.1
(3)
A 		3.5
(-2.6)
A 		2.6
(-3)
A 		5.6
(-1.8)
A 		15
B 18.3
(1.6)
A 		2.8
(-3)
A 		8.4
(-1.3)
A 		23
(3)
A 		20
C 6.1
(-0.8)
A 		10.9
(1.4)
A 		14.5
(3)
A 		1.4
(-3)
A 		13
avr 13.8
(3) 		5.7
(-3) 		8.5
(-0.9) 		10
(0.2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 3.5
(-3)
A 		10.5
(-2.7)
A 		20.2
(-2.2)
A 		24.7
(-2)
P 		105.6
(1.6)
P 		135.4
(3)
P 		132
B 10.5
(-2.8)
A 		16
(-2.7)
A 		4.4
(-3)
A 		17.3
(-2.6)
A 		137.6
(0.9)
P 		209.7
(3)
P 		205
C 4
(-3)
A 		15.4
(-2.7)
A 		16.7
(-2.7)
A 		26.1
(-2.4)
A 		77.1
(-1.2)
P 		244.4
(3)
P 		240
avr 6
(-3) 		14
(-2.7) 		13.8
(-2.8) 		22.7
(-2.5) 		106.8
(0.2) 		196.5
(3) 		191
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183024_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6274
Sequence Type Exemplar sequence
Representative Public ID R02F2.4 NCBI
Target Description R02F2.4 /REP_DB=WormBase Gene ID /WP=CE00685 /TR=Q21650 /GB=AAA50720.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065770(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065770 NCBI Caenorhabditis elegans R02F2.4 (R02F2.4) mRNA, complete cds. 11/11 None
SNAP00000033068 ENSEMBL cdna:SNAP chromosome:CEL140:III:5479360:5485843:1 11/11 None
GENEFINDER00000033085 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5484249:5485843:1 11/11 None
R02F2.4 ENSEMBL cdna:known chromosome:CEL140:III:5484156:5485896:1 gene:R02F2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5484153-5485842(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R02F2.4
Entrez Gene 175755 Entrez gene
SwissProt Q21650 EMBL-EBI
WormBase CE29439 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6030 chitin metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8061 chitin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA50720 Hypothetical protein R02F2.4 [Caenorhabditis elegans] ref|NP_498171.1| R02F2.4 [Caenorhabditis elegans] 0.0
blast CAE61363 Hypothetical protein CBG05204 [Caenorhabditis briggsae] 1.0E-126
blast CAE61363 Hypothetical protein CBG05204 [Caenorhabditis briggsae] 1.0E-125
blast CAE63882 Hypothetical protein CBG08448 [Caenorhabditis briggsae] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 2.5E-18
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 4.0E-15
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 3.8E-18
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 2.7E-18
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 2.6E-18
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 3.3E-12
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 2.5E-18
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 4.0E-15
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 3.8E-18
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 2.7E-18
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 2.6E-18
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 3.3E-12
Sequence
Target Sequence 
>C. ELEGANS:183024_AT
gtcgacggatatttctcatttggcagatgctcttcatcattttcagcctgtacaaatggc
attccaattgtcatgttttgtccagatgggctaatgttttccgagaaaaatcaaatgtgt
gactatgaatggaacgttgacgagtgtgacttggaatcatctggatttatggaaaactac
aaagccagtgaagccttaacgccctgcacaaatatggacaatggtctctatgctctcgat
tgtaccccgcgagttctatcgtgtcaaaatggacgagagaatatttttgagtgcccaccg
agtctggttttcaatgagaattctttgatatgtgactacccggagacttctctgaaatgc
tgcatggaagacgcattgctcattcgtgatgcctccattggaacatacgactgctccatc
gacgggctcttctcaagtactttatgctcccgtaactaccacaaatgctccaacggccag
ctcatcccacacgaatgtgctgattcgaatgctgttttctctgcaagtgctgccaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGACGGATATTTCTCATTTGGCA 78 475 730 Antisense
ATGCTCTTCATCATTTTCAGCCTGT 203 43 756 Antisense
CAAAGCCAGTGAAGCCTTAACGCCC 534 191 909 Antisense
ATGGACAATGGTCTCTATGCTCTCG 293 53 943 Antisense
TGCCCACCGAGTCTGGTTTTCAATG 266 583 1021 Antisense
TATGTGACTACCCGGAGACTTCTCT 330 655 1058 Antisense
GACGCATTGCTCATTCGTGATGCCT 144 381 1099 Antisense
GCCTCCATTGGAACATACGACTGCT 676 281 1120 Antisense
TTATGCTCCCGTAACTACCACAAAT 66 681 1171 Antisense
AGCTCATCCCACACGAATGTGCTGA 590 79 1208 Antisense
GTTTTCTCTGCAAGTGCTGCCAAAT 107 449 1243 Antisense
Sequence Source Affymetrix Proprietary Database