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[183023_at]

Description R05F9.2 /REP_DB=WormBase Gene ID /WP=CE04804 /TR=Q21747 /GB=AAA83171.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 221.6
(1.1)
M 		183
(-1.8)
A 		166.4
(-3)
A 		247.4
(3)
P 		81
B 199.9
(-0.7)
P 		153.5
(-3)
A 		157.1
(-2.8)
A 		276.1
(3)
P 		123
C 188.7
(-1.2)
A 		161.2
(-3)
A 		173.7
(-2.2)
A 		254.9
(3)
P 		94
avr 203.4
(-0.6) 		165.9
(-3) 		165.7
(-3) 		259.5
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 121.5
(-3)
A 		173.5
(1.3)
A 		127.1
(-2.5)
A 		158
(-0)
A 		134.7
(-1.9)
A 		194.6
(3)
P 		73
B 112.9
(0.2)
A 		105.4
(-0.4)
A 		111.2
(0)
A 		71
(-3)
A 		134.2
(1.8)
P 		150.3
(3)
A 		79
C 142.6
(-2.7)
P 		158.8
(-0.6)
A 		186
(3)
A 		147.1
(-2.1)
A 		140.3
(-3)
P 		160.3
(-0.4)
A 		46
avr 125.7
(-3) 		145.9
(-0.1) 		141.4
(-0.8) 		125.4
(-3) 		136.4
(-1.5) 		168.4
(3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 80.7
(3)
M 		39.7
(-2.5)
A 		43.5
(-2)
A 		36.2
(-3)
P 		45
B 63.7
(3)
P 		37.9
(-2.7)
A 		36.4
(-3)
A 		58.8
(1.9)
P 		27
C 62.5
(3)
A 		46.3
(-2)
A 		60.5
(2.4)
A 		43
(-3)
P 		20
avr 69
(3) 		41.3
(-3) 		46.8
(-1.8) 		46
(-2) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 22.4
(-3)
A 		61.7
(3)
A 		27.7
(-2.2)
A 		40.1
(-0.3)
A 		40.7
(-0.2)
A 		47.4
(0.8)
P 		39
B 39.3
(0.3)
A 		35.1
(-0.4)
A 		27
(-1.7)
A 		18.8
(-3)
A 		54.5
(2.7)
P 		56.1
(3)
A 		37
C 52.9
(2.8)
P 		48.4
(1.7)
A 		47.3
(1.4)
A 		29.6
(-3)
A 		45.4
(0.9)
P 		53.7
(3)
A 		24
avr 38.2
(-0.7) 		48.4
(2) 		34
(-1.8) 		29.5
(-3) 		46.9
(1.6) 		52.4
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183023_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4329
Sequence Type Exemplar sequence
Representative Public ID R05F9.2 NCBI
Target Description R05F9.2 /REP_DB=WormBase Gene ID /WP=CE04804 /TR=Q21747 /GB=AAA83171.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170983(10), NM_001027094(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170983 NCBI Caenorhabditis elegans R05F9.1b (R05F9.1) mRNA, complete cds. 10/11 A 
NM_001027094 NCBI Caenorhabditis elegans R05F9.1d (R05F9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000043887 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4905045:4911404:1 10/11 None
R05F9.1b ENSEMBL cdna:known chromosome:CEL140:II:4904997:4911821:1 gene:R05F9.1 10/11 A 
R05F9.1d ENSEMBL cdna:known chromosome:CEL140:II:4905045:4906225:1 gene:R05F9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043872 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173847 4 2 NM_001027094 183023_at (11)
NM_062493 192999_s_at (11)
NM_170983 183023_at (10), 192999_s_at (11)
NM_170984 192999_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4905042-4906223(+) 100.0 100.0
Public Domain and Genome References
Ensembl R05F9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_740981 R05F9.1b [Caenorhabditis elegans] gb|AAA83171.2| Hypothetical protein R05F9.1b [Caenorhabditis elegans] 0.0
blast CAE58998 Hypothetical protein CBG02271 [Caenorhabditis briggsae] 0.0
blast NP_740982 R05F9.1a [Caenorhabditis elegans] gb|AAA83172.1| Hypothetical protein R05F9.1a [Caenorhabditis elegans] 0.0
blast NP_001022265 R05F9.1d [Caenorhabditis elegans] gb|AAS60256.1| Hypothetical protein R05F9.1d [Caenorhabditis elegans] 1.0E-85
Sequence
Target Sequence 
>C. ELEGANS:183023_AT
gcgttaatgtgccagatgctcctgcgcgacgactcttcgataacacttctgacgaatctg
atgtttcactggataatgatgacaaaaccggggctgaaactgacggttcctcttcaagtc
gtggatgtctgaagagcgagagatctcgcaaagatcatgccagcacgtcatcaacaagaa
ctgttcgtgcaccacagcaggtttcttggtcatttggagctaaacctgcgactccacact
ctcaaccgcctgccggactcaaaaaagaaaataaccaaaaaagcaattctgcacctgctc
aaggctataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTTAATGTGCCAGATGCTCCTGC 561 291 83 Antisense
ACGACTCTTCGATAACACTTCTGAC 640 91 111 Antisense
CTGACGAATCTGATGTTTCACTGGA 264 237 131 Antisense
GACAAAACCGGGGCTGAAACTGACG 138 359 163 Antisense
GAAACTGACGGTTCCTCTTCAAGTC 149 355 178 Antisense
GGTTCCTCTTCAAGTCGTGGATGTC 627 507 187 Antisense
AAGATCATGCCAGCACGTCATCAAC 228 155 233 Antisense
AACTGTTCGTGCACCACAGCAGGTT 25 143 261 Antisense
GCAGGTTTCTTGGTCATTTGGAGCT 159 311 279 Antisense
TGGAGCTAAACCTGCGACTCCACAC 424 549 297 Antisense
ATTCTGCACCTGCTCAAGGCTATAA 296 11 368 Antisense
Sequence Source Affymetrix Proprietary Database