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[183022_at]

Description T25B6.3 /REP_DB=WormBase Gene ID /WP=CE05013 /TR=Q22762 /GB=AAC48218.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 21      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 58.3
(0.7)
A 		53.8
(0.2)
A 		23.7
(-3)
A 		80.2
(3)
A 		57
B 77
(3)
A 		23.6
(-3)
A 		39.2
(-1.2)
A 		55.4
(0.6)
A 		53
C 49.1
(-3)
P 		80.4
(1.4)
A 		50.4
(-2.8)
A 		92.2
(3)
A 		43
avr 61.5
(0.7) 		52.6
(-0.7) 		37.8
(-3) 		75.9
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 80.3
(3)
A 		39
(-2.1)
A 		57.2
(0.2)
A 		39.6
(-2)
A 		31.5
(-3)
A 		58.5
(0.3)
A 		49
B 50.3
(0.5)
A 		66.3
(3)
M 		65.8
(2.9)
A 		41.4
(-0.9)
A 		27.8
(-3)
A 		28.3
(-2.9)
A 		39
C 28.1
(-2.8)
A 		66.5
(3)
A 		34
(-1.9)
A 		26.9
(-3)
A 		54.2
(1.1)
A 		66.5
(3)
P 		40
avr 52.9
(1.8) 		57.3
(3) 		52.3
(1.6) 		36
(-3) 		37.8
(-2.5) 		51.1
(1.3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 21.2
(3)
A 		11.7
(-0.8)
A 		6.2
(-3)
A 		11.7
(-0.8)
A 		15
B 24.5
(3)
A 		5.8
(-3)
A 		9.1
(-1.9)
A 		11.8
(-1.1)
A 		19
C 16.3
(-2.4)
P 		23.1
(3)
A 		17.6
(-1.4)
A 		15.6
(-3)
A 		8
avr 20.7
(3) 		13.5
(-1.5) 		11
(-3) 		13
(-1.8) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 14.8
(3)
A 		13.9
(2)
A 		12.5
(0.4)
A 		10
(-2.4)
A 		9.5
(-3)
A 		14.2
(2.3)
A 		5
B 17.5
(0.6)
A 		22.1
(3)
M 		16
(-0.2)
A 		11
(-2.8)
A 		11.3
(-2.6)
A 		10.6
(-3)
A 		12
C 10.4
(-1.2)
A 		20.3
(2.3)
A 		8.6
(-1.9)
A 		5.4
(-3)
A 		17.5
(1.3)
A 		22.3
(3)
P 		17
avr 14.2
(0.2) 		18.8
(3) 		12.4
(-0.8) 		8.8
(-3) 		12.8
(-0.6) 		15.7
(1.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183022_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17168
Sequence Type Exemplar sequence
Representative Public ID T25B6.3 NCBI
Target Description T25B6.3 /REP_DB=WormBase Gene ID /WP=CE05013 /TR=Q22762 /GB=AAC48218.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077125(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077125 NCBI Caenorhabditis elegans T25B6.3 (T25B6.3) mRNA, complete cds. 11/11 None
GENEFINDER00000006432 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9027539:9028220:1 11/11 None
T25B6.3 ENSEMBL cdna:known chromosome:CEL140:X:9027539:9028220:1 gene:T25B6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9027537-9028219(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T25B6.3
Entrez Gene 188875 Entrez gene
SwissProt Q22762 EMBL-EBI
WormBase CE05013 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509526 T25B6.3 [Caenorhabditis elegans] gb|AAC48218.1| Hypothetical protein T25B6.3 [Caenorhabditis elegans] 4.0E-86
blast CAE59571 Hypothetical protein CBG02968 [Caenorhabditis briggsae] 8.0E-27
blast AAB04581 Hypothetical protein C09B7.2 [Caenorhabditis elegans] ref|NP_508473.1| C09B7.2 [Caenorhabditis elegans] 8.0E-22
Sequence
Target Sequence 
>C. ELEGANS:183022_AT
tgaccctgtcagtttttcattgtctaccgctcatttgcatcgtcatagcaacagccaaaa
tcgaagaacttaaggagacagaacaaatcttggagctcaacaaccttgccaaggtagaca
tgtcatctgcgtcaaaagaactgtttcaagagttcatgagcactctttgttggaacaatc
tcactccaaaaaactttttggaaaactatattagatgggaaaaagtggagtttttggaaa
gcgcaaaaaagtttcttgtcccgtcacagtccgaccatcatttgtacaacaagtacttct
ttcacctcgggcacaatttcctttccaactgcaccgtcaaaaacgacaaaaaatggagag
agtctcactttgagaagcacgagaatgatttgtttgatacctacatgtacgacgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACCCTGTCAGTTTTTCATTGTCT 35 571 14 Antisense
TTCATTGTCTACCGCTCATTTGCAT 578 687 29 Antisense
TACCGCTCATTTGCATCGTCATAGC 675 647 38 Antisense
GCATCGTCATAGCAACAGCCAAAAT 211 309 50 Antisense
AATCTTGGAGCTCAACAACCTTGCC 353 169 99 Antisense
AAGGTAGACATGTCATCTGCGTCAA 616 159 124 Antisense
TCATGAGCACTCTTTGTTGGAACAA 205 623 167 Antisense
GTCACAGTCCGACCATCATTTGTAC 299 465 276 Antisense
GTACAACAAGTACTTCTTTCACCTC 473 461 297 Antisense
TCCAACTGCACCGTCAAAAACGACA 101 587 337 Antisense
GTTTGATACCTACATGTACGACGGA 203 449 405 Antisense
Sequence Source Affymetrix Proprietary Database