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[183021_at]

Description F48G7.4 /REP_DB=WormBase Gene ID /WP=CE10760 /TR=O44584 /GB=AAG24120.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1798
1 2 3 4 range
A 122.6
(-2.8)
M 		108
(-2.9)
A 		68.5
(-3)
A 		1800.9
(3)
P 		1732
B 127.7
(-2.9)
A 		119.3
(-2.9)
A 		93.4
(-3)
A 		1866.7
(3)
P 		1773
C 120.9
(-2.8)
A 		135.7
(-2.8)
A 		72.5
(-3)
A 		1862.4
(3)
P 		1790
avr 123.7
(-2.8) 		121
(-2.9) 		78.1
(-3) 		1843.3
(3) 		1765

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 354
1 2 3 4 5 6 range
A 82
(-2.6)
A 		74.9
(-2.7)
A 		57.1
(-3)
A 		132.8
(-1.7)
A 		126.5
(-1.8)
P 		411.5
(3)
P 		354
B 84.2
(-2.7)
A 		75.4
(-2.9)
A 		68.9
(-3)
A 		102.9
(-2.3)
A 		164.5
(-1.1)
P 		364.6
(3)
P 		296
C 72
(-3)
A 		100.6
(-2.5)
A 		81.5
(-2.8)
A 		135.4
(-1.8)
M 		131
(-1.9)
P 		390.5
(3)
P 		319
avr 79.4
(-2.8) 		83.6
(-2.7) 		69.2
(-3) 		123.7
(-2) 		140.7
(-1.7) 		388.9
(3) 		320
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 380
1 2 3 4 range
A 44.6
(-2.3)
M 		23.4
(-2.9)
A 		17.9
(-3)
A 		263.6
(3)
P 		246
B 40.7
(-2.7)
A 		29.5
(-2.9)
A 		21.6
(-3)
A 		397.8
(3)
P 		376
C 40
(-2.7)
A 		39
(-2.7)
A 		25.3
(-3)
A 		314
(3)
P 		289
avr 41.8
(-2.6) 		30.6
(-2.8) 		21.6
(-3) 		325.1
(3) 		304

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 15.1
(-2.8)
A 		26.6
(-2)
A 		12.4
(-3)
A 		33.7
(-1.5)
A 		38.2
(-1.2)
P 		100.2
(3)
P 		88
B 29.3
(-2.4)
A 		25.1
(-2.6)
A 		16.7
(-3)
A 		27.3
(-2.5)
A 		66.8
(-0.5)
P 		136
(3)
P 		119
C 26.7
(-2.7)
A 		30.7
(-2.5)
A 		20.8
(-3)
A 		27.2
(-2.7)
M 		42.4
(-1.8)
P 		130.7
(3)
P 		110
avr 23.7
(-2.6) 		27.5
(-2.4) 		16.6
(-3) 		29.4
(-2.3) 		49.1
(-1.2) 		122.3
(3) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183021_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14823
Sequence Type Exemplar sequence
Representative Public ID F48G7.4 NCBI
Target Description F48G7.4 /REP_DB=WormBase Gene ID /WP=CE10760 /TR=O44584 /GB=AAG24120.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070865(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070865 NCBI Caenorhabditis elegans F48G7.4 (F48G7.4) mRNA, complete cds. 11/11 None
SNAP00000037289 ENSEMBL cdna:SNAP chromosome:CEL140:V:619289:620792:1 9/11 None
GENEFINDER00000037304 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:619289:621332:1 11/11 None
F48G7.4 ENSEMBL cdna:known chromosome:CEL140:V:620045:621332:1 gene:F48G7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:620044-621332(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48G7.4
Entrez Gene 185993 Entrez gene
SwissProt O44584 EMBL-EBI
WormBase CE10760 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24120 Hypothetical protein F48G7.4 [Caenorhabditis elegans] ref|NP_503266.1| F48G7.4 [Caenorhabditis elegans] 1.0E-158
blast AAG24120 Hypothetical protein F48G7.4 [Caenorhabditis elegans] ref|NP_503266.1| F48G7.4 [Caenorhabditis elegans] 1.0E-157
blast AAG24120 Hypothetical protein F48G7.4 [Caenorhabditis elegans] ref|NP_503266.1| F48G7.4 [Caenorhabditis elegans] 1.0E-132
blast CAE71067 Hypothetical protein CBG17911 [Caenorhabditis briggsae] 1.0E-93
blast CAE71067 Hypothetical protein CBG17911 [Caenorhabditis briggsae] 2.0E-93
blast CAE71067 Hypothetical protein CBG17911 [Caenorhabditis briggsae] 2.0E-85
blast CAE71061 Hypothetical protein CBG17904 [Caenorhabditis briggsae] 2.0E-15
blast CAE71061 Hypothetical protein CBG17904 [Caenorhabditis briggsae] 9.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 9.7E-5
Sequence
Target Sequence 
>C. ELEGANS:183021_AT
ggagcatcgaaatgtggagcccggagtgcatttcctccgtttgctcggctgcttcgactc
gaaatacctgaaatctttggacattgtcaaatcgaacttcacatctgctacaataaacat
gctagcaaaatctgaatactggtggtttttaaaggaaatcaaaatggggatcaatcagcc
aactatgatcgatttgttcttgacagctgaacgattaaaactctcggcgcaaagcttcaa
ggaatcagaattgaggaaaattgtagagagctatcggtcgagagatctaccacgaggatc
atatttccagctcgatgctcaaaagccgtggaatcttgaggaagtgctagctgggttccc
aaatgttttatcgcttgagaatgttggctctaaaagattctacactcaaaaactacaaat
cggcaccggtgaacgtgtacttattgtgaaactatctgcagacaccatcgaaggcgtcgt
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCATCGAAATGTGGAGCCCGGA 574 519 312 Antisense
CCGGAGTGCATTTCCTCCGTTTGCT 458 261 332 Antisense
CTCGGCTGCTTCGACTCGAAATACC 108 233 355 Antisense
AATCGAACTTCACATCTGCTACAAT 55 169 401 Antisense
AAAACTCTCGGCGCAAAGCTTCAAG 528 129 528 Antisense
GCTATCGGTCGAGAGATCTACCACG 284 303 581 Antisense
GAGGATCATATTTCCAGCTCGATGC 365 403 605 Antisense
CCAGCTCGATGCTCAAAAGCCGTGG 130 273 618 Antisense
GCTGGGTTCCCAAATGTTTTATCGC 608 293 661 Antisense
AATCGGCACCGGTGAACGTGTACTT 312 169 729 Antisense
TGCAGACACCATCGAAGGCGTCGTC 20 577 768 Antisense
Sequence Source Affymetrix Proprietary Database