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[183020_at]

Description F48G7.8 /REP_DB=WormBase Gene ID /WP=CE10768 /TR=O44587 /GB=AAG24124.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 49      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 734
1 2 3 4 range
A 3.8
(-3)
A 		700.5
(2.9)
P 		715.2
(3)
P 		17.8
(-2.9)
A 		711
B 23.2
(-3)
A 		673.8
(2.8)
P 		692.2
(3)
P 		18.9
(-3)
A 		673
C 3.3
(-3)
A 		737.5
(3)
P 		702
(2.7)
P 		3.6
(-3)
A 		734
avr 10.1
(-3) 		703.9
(3) 		703.1
(3) 		13.4
(-3) 		694

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 944
1 2 3 4 5 6 range
A 10.8
(-3)
A 		459.7
(-0.1)
P 		264.1
(-1.4)
P 		330.1
(-1)
P 		339.1
(-0.9)
P 		951.8
(3)
P 		941
B 7.5
(-3)
A 		351.9
(0.3)
P 		249.9
(-0.7)
P 		179.3
(-1.3)
P 		391.4
(0.7)
P 		631.4
(3)
P 		624
C 7.6
(-3)
A 		329.8
(-0.9)
P 		299.3
(-1.1)
P 		243.6
(-1.5)
P 		434.8
(-0.2)
P 		932.8
(3)
P 		925
avr 8.6
(-3) 		380.5
(-0.3) 		271.1
(-1.1) 		251
(-1.2) 		388.4
(-0.3) 		838.7
(3) 		830
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 1.4
(-3)
A 		152.1
(1.9)
P 		187
(3)
P 		2.6
(-3)
A 		186
B 7.4
(-2.9)
A 		166.4
(3)
P 		160.4
(2.8)
P 		4
(-3)
A 		162
C 1.1
(-3)
A 		212
(2.2)
P 		244.7
(3)
P 		0.6
(-3)
A 		244
avr 3.3
(-3) 		176.8
(2.4) 		197.4
(3) 		2.4
(-3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 2
(-3)
A 		163.5
(1.2)
P 		57.5
(-1.6)
P 		83.7
(-0.9)
P 		102.3
(-0.4)
P 		231.7
(3)
P 		230
B 2.6
(-3)
A 		117.1
(-0)
P 		60.7
(-1.5)
P 		47.5
(-1.8)
P 		159
(1)
P 		235.4
(3)
P 		233
C 2.8
(-3)
A 		100.6
(-1.1)
P 		76.2
(-1.6)
P 		49
(-2.1)
P 		140.7
(-0.3)
P 		312.3
(3)
P 		310
avr 2.5
(-3) 		127.1
(-0.1) 		64.8
(-1.5) 		60.1
(-1.7) 		134
(0.1) 		259.8
(3) 		257
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183020_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15274
Sequence Type Exemplar sequence
Representative Public ID F48G7.8 NCBI
Target Description F48G7.8 /REP_DB=WormBase Gene ID /WP=CE10768 /TR=O44587 /GB=AAG24124.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070869(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070869 NCBI Caenorhabditis elegans F48G7.8 (F48G7.8) mRNA, complete cds. 11/11 None
SNAP00000037293 ENSEMBL cdna:SNAP chromosome:CEL140:V:626935:627479:-1 11/11 None
GENEFINDER00000037308 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:626935:628445:-1 11/11 None
F48G7.8 ENSEMBL cdna:known chromosome:CEL140:V:626935:627479:-1 gene:F48G7.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:626934-627479(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48G7.8
Entrez Gene 185996 Entrez gene
SwissProt O44587 EMBL-EBI
WormBase CE10768 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24124 Hypothetical protein F48G7.8 [Caenorhabditis elegans] ref|NP_503270.1| F48G7.8 [Caenorhabditis elegans] 3.0E-94
blast AAG24124 Hypothetical protein F48G7.8 [Caenorhabditis elegans] ref|NP_503270.1| F48G7.8 [Caenorhabditis elegans] 1.0E-93
blast AAG24121 Hypothetical protein F48G7.5 [Caenorhabditis elegans] ref|NP_503267.1| F48G7.5 [Caenorhabditis elegans] 2.0E-85
blast AAG24123 Hypothetical protein F48G7.7 [Caenorhabditis elegans] ref|NP_503269.1| F48G7.7 [Caenorhabditis elegans] 4.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.0E-16
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.0E-13
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.0E-16
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.0E-13
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 4.6E-13
Sequence
Target Sequence 
>C. ELEGANS:183020_AT
gctgcttcgagtggtttttctcacatttgtcattctctgggcaggcgcggaaatccagtt
gggctgcaaaagcactccattccgaaaaggtgtcaatccatgccctccacacttcacaga
attacccggagggctttgttgctccgatgacgacgtctatatcatatcggacaatgacac
cacactttccccaacaacaaccacaaccgctgctccatgccaagacagattgaaccctgc
gacaggagtcagcgattgcccaatgcgacgcaatttgtgcacggatccaaattacagaaa
gatgatgcacgaacaatgcccaaagacttgcggattctgcactactgggtcgactaccaa
ggcaccagcgtgctctgacaaagtggatccgagaactggagttagtgattgcccacaaaa
gaagtatctgtgcacagatcctacgtacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGCTTCGAGTGGTTTTTCTCACA 491 295 15 Antisense
CTCACATTTGTCATTCTCTGGGCAG 219 229 34 Antisense
GGCAGGCGCGGAAATCCAGTTGGGC 709 529 54 Antisense
GTTGGGCTGCAAAAGCACTCCATTC 433 437 72 Antisense
CCTCCACACTTCACAGAATTACCCG 238 265 118 Antisense
TACCCGGAGGGCTTTGTTGCTCCGA 708 649 137 Antisense
TCGGACAATGACACCACACTTTCCC 49 607 181 Antisense
GCCAAGACAGATTGAACCCTGCGAC 119 277 233 Antisense
CTACCAAGGCACCAGCGTGCTCTGA 320 225 368 Antisense
GCGTGCTCTGACAAAGTGGATCCGA 701 291 382 Antisense
TCTGTGCACAGATCCTACGTACAAG 98 607 441 Antisense
Sequence Source Affymetrix Proprietary Database