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[183019_at]

Description T17A3.4 /REP_DB=WormBase Gene ID /WP=CE19582 /TR=O76692 /GB=AAC26951.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 2.1
(-3)
A 		19.6
(0.8)
A 		8
(-1.7)
A 		29.4
(3)
A 		27
B 3.1
(-3)
A 		11.1
(-0)
A 		17
(2.2)
A 		19.2
(3)
A 		16
C 9.4
(-3)
A 		19.6
(-0.4)
A 		10
(-2.8)
A 		33.3
(3)
A 		24
avr 4.9
(-3) 		16.8
(0.2) 		11.7
(-1.2) 		27.3
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 15.3
(1.3)
A 		13.1
(0.6)
A 		3.9
(-2.3)
A 		2.5
(-2.7)
A 		1.5
(-3)
A 		20.7
(3)
A 		19
B 11.1
(-0.4)
A 		5.1
(-2)
A 		12.5
(-0.1)
A 		24
(3)
A 		1.4
(-3)
A 		4.2
(-2.3)
A 		23
C 6.2
(-2.1)
A 		18
(0.4)
A 		13.8
(-0.5)
A 		1.7
(-3)
A 		10.8
(-1.1)
A 		30.7
(3)
P 		29
avr 10.9
(-0.3) 		12.1
(0.2) 		10.1
(-0.6) 		9.4
(-0.9) 		4.6
(-3) 		18.5
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.8
(-3)
A 		4.3
(3)
A 		2.1
(-0.8)
A 		4.3
(3)
A 		4
B 1
(-3)
A 		2.7
(0.3)
A 		3.9
(2.6)
A 		4.1
(3)
A 		3
C 3.1
(-3)
A 		5.6
(3)
A 		3.5
(-2)
A 		5.6
(3)
A 		3
avr 1.6
(-3) 		4.2
(2) 		3.2
(0.1) 		4.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.8
(0.1)
A 		4.6
(2.5)
A 		0.8
(-2.5)
A 		0.6
(-2.7)
A 		0.4
(-3)
A 		5
(3)
A 		5
B 3.9
(0.5)
A 		1.7
(-1.8)
A 		3
(-0.5)
A 		6.3
(3)
A 		0.6
(-3)
A 		1.5
(-2.1)
A 		6
C 2.3
(-1.8)
A 		5.5
(0.1)
A 		3.5
(-1.1)
A 		0.3
(-3)
A 		3.5
(-1.1)
A 		10.3
(3)
P 		10
avr 3
(-0.8) 		3.9
(0.5) 		2.4
(-1.7) 		2.4
(-1.7) 		1.5
(-3) 		5.6
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183019_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8136
Sequence Type Exemplar sequence
Representative Public ID T17A3.4 NCBI
Target Description T17A3.4 /REP_DB=WormBase Gene ID /WP=CE19582 /TR=O76692 /GB=AAC26951.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064754(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064754 NCBI Caenorhabditis elegans T17A3.4 (T17A3.4) mRNA, complete cds. 11/11 None
GENEFINDER00000008197 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:139643:153417:-1 11/11 None
SNAP00000008187 ENSEMBL cdna:SNAP chromosome:CEL140:III:142162:142890:-1 11/11 None
T17A3.4 ENSEMBL cdna:known chromosome:CEL140:III:142162:143216:-1 gene:T17A3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:142161-143216(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T17A3.4
Entrez Gene 188566 Entrez gene
SwissProt O76692 EMBL-EBI
WormBase CE19582 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26951 Hypothetical protein T17A3.4 [Caenorhabditis elegans] ref|NP_497155.1| T17A3.4 [Caenorhabditis elegans] 0.0
blast AAC26954 Vegf (vascular endothelial growth factor) receptor family protein 2 [Caenorhabditis elegans] ref|NP_497158.2| VEGF (vascular endothelial growth factor) Receptor family member (ver-2) [Caenorhabditis elegans] 0.0
blast AAC26950 Hypothetical protein T17A3.3 [Caenorhabditis elegans] ref|NP_497154.1| T17A3.3 [Caenorhabditis elegans] 0.0
blast AAC26951 Hypothetical protein T17A3.4 [Caenorhabditis elegans] ref|NP_497155.1| T17A3.4 [Caenorhabditis elegans] 1.0E-138
blast AAC26950 Hypothetical protein T17A3.3 [Caenorhabditis elegans] ref|NP_497154.1| T17A3.3 [Caenorhabditis elegans] 1.0E-133
blast AAC26953 Hypothetical protein T17A3.7 [Caenorhabditis elegans] ref|NP_497157.1| T17A3.7 [Caenorhabditis elegans] 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.2E-7
Pfam IPR000433 EMBL-EBI Zn-finger, ZZ type 2.6E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.1E-6
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.5E-5
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.2E-7
Pfam IPR000719 EMBL-EBI Protein kinase 9.6E-52
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008197 1 298-320
Sequence
Target Sequence 
>C. ELEGANS:183019_AT
tcacaagtctgaatttagtacgctcatgatttctcacgattacgactacaaaacgatgct
gcaagagttgaaagatttcaagattcgcaaactgtgcatttcttctgatcgcattcaaaa
ctccgagcttcgtagaaacctattggagaagtattcacgacagtttagagagctggctct
agactatcattcattgaaacctcaagagtttcacttaattgtcagtattagctacaataa
ttgttacctgtacaaagttcccatgaaacttgaagatttgttggtttcaaatattttttt
aatgtgtattgataaaccatgtcccttaaagcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACAAGTCTGAATTTAGTACGCTC 51 629 396 Antisense
TAGTACGCTCATGATTTCTCACGAT 557 653 411 Antisense
GATTTCTCACGATTACGACTACAAA 574 427 423 Antisense
ATTCGCAAACTGTGCATTTCTTCTG 453 9 478 Antisense
GTGCATTTCTTCTGATCGCATTCAA 301 481 489 Antisense
TGATCGCATTCAAAACTCCGAGCTT 335 565 501 Antisense
CTCCGAGCTTCGTAGAAACCTATTG 243 235 516 Antisense
GGAGAAGTATTCACGACAGTTTAGA 355 517 540 Antisense
ACCTCAAGAGTTTCACTTAATTGTC 323 77 594 Antisense
GTTACCTGTACAAAGTTCCCATGAA 577 445 638 Antisense
GATAAACCATGTCCCTTAAAGCAAC 399 319 706 Antisense
Sequence Source Affymetrix Proprietary Database