[Home] | [Total List]

[183018_at]

Description F16B4.7 /REP_DB=WormBase Gene ID /WP=CE17017 /TR=O44629 /GB=AAB94238.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1545
1 2 3 4 range
A 73.8
(-2.8)
A 		25.8
(-3)
A 		38.4
(-2.9)
A 		1231.3
(3)
P 		1206
B 63.5
(-2.9)
A 		36.4
(-3)
A 		49.2
(-2.9)
A 		1562.3
(3)
P 		1526
C 62.8
(-2.8)
A 		49
(-2.8)
A 		17.7
(-3)
A 		1217.5
(3)
P 		1200
avr 66.7
(-2.9) 		37.1
(-3) 		35.1
(-3) 		1337
(3) 		1302

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1732
1 2 3 4 5 6 range
A 10.5
(-3)
A 		73.4
(-2.8)
A 		87.7
(-2.7)
A 		67.8
(-2.8)
A 		351.7
(-1.7)
P 		1556.8
(3)
P 		1546
B 75.6
(-2.9)
A 		49.6
(-3)
A 		52.1
(-3)
A 		47.1
(-3)
A 		387.7
(-1.8)
P 		1699.7
(3)
P 		1653
C 59.1
(-3)
A 		46
(-3)
A 		66.2
(-2.9)
A 		61.7
(-2.9)
A 		411.9
(-1.7)
P 		1742.4
(3)
P 		1696
avr 48.4
(-3) 		56.3
(-3) 		68.7
(-2.9) 		58.9
(-3) 		383.8
(-1.8) 		1666.3
(3) 		1618
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 327
1 2 3 4 range
A 26.9
(-2.3)
A 		5.6
(-3)
A 		10
(-2.8)
A 		180.2
(3)
P 		175
B 20.3
(-2.8)
A 		9
(-3)
A 		11.4
(-3)
A 		332.9
(3)
P 		324
C 20.8
(-2.6)
A 		14.1
(-2.8)
A 		6.2
(-3)
A 		205.3
(3)
P 		199
avr 22.7
(-2.6) 		9.6
(-3) 		9.2
(-3) 		239.5
(3) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 632
1 2 3 4 5 6 range
A 1.9
(-3)
A 		26.1
(-2.6)
A 		19.1
(-2.7)
A 		17.2
(-2.8)
A 		106.1
(-1.3)
P 		379
(3)
P 		377
B 26.3
(-2.9)
A 		16.5
(-3)
A 		12.7
(-3)
A 		12.5
(-3)
A 		157.5
(-1.6)
P 		633.8
(3)
P 		621
C 21.9
(-2.9)
A 		14
(-3)
A 		16.8
(-3)
A 		12.4
(-3)
A 		133.3
(-1.7)
P 		583.3
(3)
P 		571
avr 16.7
(-3) 		18.9
(-2.9) 		16.2
(-3) 		14
(-3) 		132.3
(-1.6) 		532
(3) 		518
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183018_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15271
Sequence Type Exemplar sequence
Representative Public ID F16B4.7 NCBI
Target Description F16B4.7 /REP_DB=WormBase Gene ID /WP=CE17017 /TR=O44629 /GB=AAB94238.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071046(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071046 NCBI Caenorhabditis elegans F16B4.7 (F16B4.7) mRNA, complete cds. 11/11 None
SNAP00000004015 ENSEMBL cdna:SNAP chromosome:CEL140:V:1585551:1588763:1 11/11 None
GENEFINDER00000004029 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1585551:1585857:1 11/11 None
F16B4.7 ENSEMBL cdna:known chromosome:CEL140:V:1585546:1586006:1 gene:F16B4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1585550-1585857(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16B4.7
Entrez Gene 178646 Entrez gene
SwissProt O44629 EMBL-EBI
WormBase CE17017 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68334 Hypothetical protein F16B4.6 [Caenorhabditis elegans] ref|NP_503448.1| F16B4.6 [Caenorhabditis elegans] 8.0E-66
blast CAB54506 Hypothetical protein Y79H2A.4 [Caenorhabditis elegans] ref|NP_499569.1| Y79H2A.4 [Caenorhabditis elegans] 2.0E-20
blast CAB60500 Hypothetical protein Y56A3A.18 [Caenorhabditis elegans] ref|NP_499552.1| Y56A3A.18 [Caenorhabditis elegans] 3.0E-15
Sequence
Target Sequence 
>C. ELEGANS:183018_AT
gaaattctacattctcctggtagtccttgtcgctttcgttgctgctaaaccgcatccggg
gtacggtaggccatcgtatggcggaggttacggcggtggaggtggtgatttcggtggagg
tggcagtggtggtcaatggggatcgcaatcatcatcgttccaacagagtcaaagctcggg
aggatttcagaataacgctggaggtggatttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATTCTACATTCTCCTGGTAGTC 531 363 15 Antisense
CTACATTCTCCTGGTAGTCCTTGTC 330 227 21 Antisense
CTGCTAAACCGCATCCGGGGTACGG 677 233 56 Antisense
TCCGGGGTACGGTAGGCCATCGTAT 499 593 69 Antisense
GCCATCGTATGGCGGAGGTTACGGC 594 279 84 Antisense
GGTGGAGGTGGTGATTTCGGTGGAG 424 499 109 Antisense
GATTTCGGTGGAGGTGGCAGTGGTG 423 427 121 Antisense
ATCATCATCGTTCCAACAGAGTCAA 115 31 162 Antisense
GTTCCAACAGAGTCAAAGCTCGGGA 231 441 171 Antisense
AGCTCGGGAGGATTTCAGAATAACG 687 77 187 Antisense
GAATAACGCTGGAGGTGGATTTGGA 458 325 204 Antisense
Sequence Source Affymetrix Proprietary Database