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[183016_at]

Description F46F5.1 /REP_DB=WormBase Gene ID /WP=CE19418 /TR=Q9TXX3 /GB=AAC78183.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 50      6grp_total > 14      4grp_total > 11      6grp_high1_sub > 03_04      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 41.9
(-2.3)
A 		33.7
(-3)
A 		52.9
(-1.4)
A 		106
(3)
A 		72
B 46.3
(-3)
A 		50.6
(2.1)
M 		48.8
(-0.1)
A 		51.4
(3)
A 		5
C 48.1
(-0.9)
A 		57.1
(-0.3)
P 		15.8
(-3)
A 		108.3
(3)
P 		93
avr 45.4
(-2.2) 		47.1
(-2) 		39.2
(-3) 		88.6
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 70.9
(3)
A 		55
(0.2)
A 		59.9
(1.1)
P 		37
(-3)
A 		52.9
(-0.2)
P 		54.8
(0.2)
A 		34
B 56.7
(3)
P 		56.1
(2.7)
P 		55
(2.2)
A 		50.4
(-0.1)
P 		46.4
(-2.1)
P 		44.6
(-3)
P 		12
C 39.3
(-0.8)
A 		43.8
(-0.3)
A 		20.6
(-2.7)
M 		76.7
(3)
P 		17.5
(-3)
A 		38.4
(-0.9)
P 		59
avr 55.6
(3) 		51.6
(1.6) 		45.2
(-0.7) 		54.7
(2.7) 		38.9
(-3) 		45.9
(-0.5) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 15.3
(2.9)
A 		7.3
(-3)
A 		13.8
(1.8)
A 		15.5
(3)
A 		8
B 14.8
(3)
A 		12.5
(-0.6)
M 		11.3
(-2.5)
A 		11
(-3)
A 		4
C 15.9
(1.9)
A 		16.4
(2.1)
P 		5.5
(-3)
A 		18.3
(3)
P 		13
avr 15.3
(3) 		12.1
(-0.8) 		10.2
(-3) 		14.9
(2.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 13.1
(-0.8)
A 		19.6
(3)
A 		13.1
(-0.8)
P 		9.4
(-3)
A 		15.9
(0.8)
P 		13.3
(-0.7)
A 		10
B 19.7
(3)
P 		18.7
(2.1)
P 		13.4
(-2.9)
A 		13.3
(-3)
P 		18.9
(2.3)
P 		16.6
(0.1)
P 		6
C 14.6
(2.5)
A 		13.4
(1.8)
A 		5.2
(-3)
M 		15.4
(3)
P 		5.7
(-2.7)
A 		12.9
(1.5)
P 		10
avr 15.8
(1.7) 		17.2
(3) 		10.6
(-3) 		12.7
(-1.1) 		13.5
(-0.4) 		14.3
(0.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183016_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5080
Sequence Type Exemplar sequence
Representative Public ID F46F5.1 NCBI
Target Description F46F5.1 /REP_DB=WormBase Gene ID /WP=CE19418 /TR=Q9TXX3 /GB=AAC78183.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061410(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061410 NCBI Caenorhabditis elegans F46F5.1 (F46F5.1) mRNA, complete cds. 11/11 None
SNAP00000029513 ENSEMBL cdna:SNAP chromosome:CEL140:II:789978:791850:-1 11/11 None
GENEFINDER00000029535 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:789978:798264:-1 11/11 None
F46F5.1 ENSEMBL cdna:known chromosome:CEL140:II:789978:791988:-1 gene:F46F5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:789977-791988(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46F5.1
Entrez Gene 185855 Entrez gene
SwissProt Q9TXX3 EMBL-EBI
WormBase CE19418 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78183 Hypothetical protein F46F5.1 [Caenorhabditis elegans] ref|NP_493811.1| F46F5.1 [Caenorhabditis elegans] 0.0
blast AAC78196 Hypothetical protein F46F5.2 [Caenorhabditis elegans] ref|NP_493812.1| F46F5.2 [Caenorhabditis elegans] 0.0
blast T23792 hypothetical protein M176.9 - Caenorhabditis elegans 0.0
blast AAC78183 Hypothetical protein F46F5.1 [Caenorhabditis elegans] ref|NP_493811.1| F46F5.1 [Caenorhabditis elegans] 1.0E-171
blast AAB95007 Hypothetical protein T04B8.1 [Caenorhabditis elegans] ref|NP_493776.2| T04B8.1 [Caenorhabditis elegans] 6.0E-46
blast AAB95007 Hypothetical protein T04B8.1 [Caenorhabditis elegans] ref|NP_493776.2| T04B8.1 [Caenorhabditis elegans] 3.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR000980 EMBL-EBI SH2 motif 7.2E-8
Pfam IPR000719 EMBL-EBI Protein kinase 5.7E-51
Sequence
Target Sequence 
>C. ELEGANS:183016_AT
gaagatcgtttttgtgactggagctagaactcacacatccattcatcaactgacgatcta
tgttggtgagcatcgcattggattgaagaagattattcgatatgttaacggaaaacaggt
tcccaatacgagtactggttggagtactgacaaaaatgaggttgtgtcatttaaaggata
cgaggatgctagtgtcagtgctgaagaggcagcggaaatcactcgtgaaatcattgagag
ctttgatgcttctgggccaaaagttcttgatgaaatcaaacgtgatcccgaatctcgcac
gttcgatttgggcagagccaaaaacgaagttgaaggcagttcccagacgagagaagatac
taagatcactgtcactactttccctggagaccgtcaacatctgaagcaattgtttgcctc
ttgtggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGATCGTTTTTGTGACTGGAGCT 295 337 741 Antisense
AGAACTCACACATCCATTCATCAAC 537 73 766 Antisense
ACAGGTTCCCAATACGAGTACTGGT 559 93 855 Antisense
GAGGATGCTAGTGTCAGTGCTGAAG 446 403 922 Antisense
TGAGAGCTTTGATGCTTCTGGGCCA 87 569 975 Antisense
TCAAACGTGATCCCGAATCTCGCAC 309 629 1016 Antisense
GAATCTCGCACGTTCGATTTGGGCA 707 327 1030 Antisense
GTTGAAGGCAGTTCCCAGACGAGAG 334 439 1069 Antisense
CTAAGATCACTGTCACTACTTTCCC 608 225 1100 Antisense
TTCCCTGGAGACCGTCAACATCTGA 603 697 1120 Antisense
AGCAATTGTTTGCCTCTTGTGGAAG 658 75 1145 Antisense
Sequence Source Affymetrix Proprietary Database