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[183015_at]

Description T17A3.3 /REP_DB=WormBase Gene ID /WP=CE19581 /TR=O76691 /GB=AAC26950.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.7
(-3)
A 		5
(-2)
A 		9.3
(1.3)
A 		11.5
(3)
A 		8
B 3.5
(-3)
A 		14.2
(3)
A 		6
(-1.6)
A 		9.8
(0.5)
A 		11
C 6.5
(0.8)
A 		5.8
(-3)
A 		5.8
(-3)
A 		6.9
(3)
A 		1
avr 4.6
(-3) 		8.3
(1.6) 		7
(0) 		9.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 6.8
(-2.4)
A 		4
(-2.8)
A 		16.1
(-0.8)
A 		2.9
(-3)
A 		11.2
(-1.6)
A 		39.4
(3)
A 		37
B 3.6
(-3)
A 		6.4
(-2.1)
A 		8.2
(-1.5)
A 		5.5
(-2.4)
A 		5.9
(-2.2)
A 		21.7
(3)
A 		18
C 4.1
(-2.8)
A 		6
(-2.5)
A 		3.1
(-3)
A 		6.2
(-2.4)
A 		4.1
(-2.8)
A 		34.9
(3)
A 		32
avr 4.8
(-3) 		5.5
(-2.8) 		9.1
(-2.1) 		4.9
(-3) 		7.1
(-2.5) 		32
(3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.4
(-1.6)
A 		1.1
(-3)
A 		2.4
(3)
A 		1.7
(-0.2)
A 		1
B 1.1
(-3)
A 		3.5
(3)
A 		1.4
(-2.3)
A 		2.1
(-0.5)
A 		2
C 2.2
(3)
A 		1.7
(-0)
A 		2
(1.8)
A 		1.2
(-3)
A 		1
avr 1.6
(-3) 		2.1
(3) 		1.9
(0.6) 		1.7
(-1.8) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.3
(-2.6)
A 		1.4
(-2.5)
A 		3.5
(-1.1)
A 		0.7
(-3)
A 		3.4
(-1.2)
A 		9.6
(3)
A 		9
B 1.2
(-3)
A 		2.1
(-2.2)
A 		2
(-2.3)
A 		1.4
(-2.8)
A 		2.4
(-2)
A 		8.1
(3)
A 		7
C 1.5
(-2.6)
A 		1.8
(-2.4)
A 		0.8
(-3)
A 		1.2
(-2.8)
A 		1.3
(-2.7)
A 		11.7
(3)
A 		11
avr 1.3
(-2.9) 		1.8
(-2.5) 		2.1
(-2.3) 		1.1
(-3) 		2.4
(-2.1) 		9.8
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183015_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8349
Sequence Type Exemplar sequence
Representative Public ID T17A3.3 NCBI
Target Description T17A3.3 /REP_DB=WormBase Gene ID /WP=CE19581 /TR=O76691 /GB=AAC26950.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064753(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064753 NCBI Caenorhabditis elegans T17A3.3 (T17A3.3) mRNA, complete cds. 11/11 None
GENEFINDER00000008197 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:139643:153417:-1 11/11 None
T17A3.3 ENSEMBL cdna:known chromosome:CEL140:III:139643:141208:-1 gene:T17A3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008186 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:139642-141208(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T17A3.3
Entrez Gene 188565 Entrez gene
SwissProt O76691 EMBL-EBI
WormBase CE19581 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26950 Hypothetical protein T17A3.3 [Caenorhabditis elegans] ref|NP_497154.1| T17A3.3 [Caenorhabditis elegans] 0.0
blast AAC26954 Vegf (vascular endothelial growth factor) receptor family protein 2 [Caenorhabditis elegans] ref|NP_497158.2| VEGF (vascular endothelial growth factor) Receptor family member (ver-2) [Caenorhabditis elegans] 0.0
blast AAC26951 Hypothetical protein T17A3.4 [Caenorhabditis elegans] ref|NP_497155.1| T17A3.4 [Caenorhabditis elegans] 0.0
blast AAC26951 Hypothetical protein T17A3.4 [Caenorhabditis elegans] ref|NP_497155.1| T17A3.4 [Caenorhabditis elegans] 1.0E-133
blast AAC26953 Hypothetical protein T17A3.7 [Caenorhabditis elegans] ref|NP_497157.1| T17A3.7 [Caenorhabditis elegans] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.3E-4
Pfam IPR000433 EMBL-EBI Zn-finger, ZZ type 2.6E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.1E-6
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.5E-5
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.2E-7
Pfam IPR000719 EMBL-EBI Protein kinase 9.6E-52
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008197 1 298-320
Sequence
Target Sequence 
>C. ELEGANS:183015_AT
ttcattcaattgtcagtcttaactacaatagtttctgtctggaaagagttgccttgaaac
tagaagatttgttggtttcaaatatttctgaaatgcgtattgatataatgcgtattggta
cacgatgtccctcaaagcaactatgcttgtttctaaaacattggattaatggatcaaaca
accgtttggaatatctcgtaatgaatcttcccgccaattccactgaaaaccaatttcttt
tgattgccttaaatggtattgaatatcaattggcaccaaccgacaaggagtgggtttttt
ccgacaatcggcctataaaaactattgtcgttgaagctggaggatttgatatcagacgga
acgatggaaccattgcaactgtcactgtcgatgaaacgtttcaatatttgcgtatgttca
gtcgggttcaaccgttacatctcgagattgccctcgcccagactcccctctcctactctt
atcgccgctccgctaggttgagagacgctggaaggcacgcccataggcttgccgagccac
ccgccagcacaatattgatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCATTCAATTGTCAGTCTTAACTA 675 687 608 Antisense
GCGTATTGGTACACGATGTCCCTCA 597 247 717 Antisense
ACACGATGTCCCTCAAAGCAACTAT 435 109 727 Antisense
ACAACCGTTTGGAATATCTCGTAAT 367 111 785 Antisense
TCCGACAATCGGCCTATAAAAACTA 482 593 907 Antisense
ATTTGCGTATGTTCAGTCGGGTTCA 389 13 1013 Antisense
GTCGGGTTCAACCGTTACATCTCGA 27 473 1028 Antisense
CGTTACATCTCGAGATTGCCCTCGC 41 247 1040 Antisense
CCGCTCCGCTAGGTTGAGAGACGCT 443 261 1092 Antisense
TGAGAGACGCTGGAAGGCACGCCCA 115 569 1106 Antisense
CCACCCGCCAGCACAATATTGATAT 57 275 1144 Antisense
Sequence Source Affymetrix Proprietary Database