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[183014_at]

Description F59A7.2 /REP_DB=WormBase Gene ID /WP=CE11438 /TR=O16281 /GB=AAB65335.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      6grp_highest_nonorm > 21      6grp_total > 23      4grp_total > 47      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 628
1 2 3 4 range
A 771.2
(3)
P 		247.9
(-2.4)
A 		194.7
(-3)
A 		287.5
(-2)
A 		577
B 803.7
(3)
P 		218.5
(-2.8)
A 		201.7
(-3)
M 		230.5
(-2.7)
P 		602
C 649.5
(3)
P 		175.5
(-3)
A 		219.4
(-2.4)
P 		252.1
(-2)
M 		474
avr 741.5
(3) 		214
(-2.9) 		205.3
(-3) 		256.7
(-2.4) 		536

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1345
1 2 3 4 5 6 range
A 1630.7
(2.7)
P 		1413.1
(1.7)
P 		1685.7
(3)
P 		1145.4
(0.5)
P 		389.3
(-3)
P 		484.2
(-2.6)
P 		1296
B 1270.5
(2.2)
P 		1319.3
(2.5)
P 		1390.1
(3)
P 		782.7
(-1.1)
P 		490.7
(-3)
P 		610.5
(-2.2)
P 		899
C 1734.1
(3)
P 		1160.1
(-0.1)
P 		1120.5
(-0.3)
P 		882.4
(-1.6)
P 		621.4
(-3)
P 		631.1
(-2.9)
P 		1113
avr 1545.1
(3) 		1297.5
(1.6) 		1398.8
(2.2) 		936.8
(-0.5) 		500.5
(-3) 		575.3
(-2.6) 		1045
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 239
1 2 3 4 range
A 280.8
(3)
P 		53.8
(-2.7)
A 		50.9
(-2.8)
A 		42.1
(-3)
A 		239
B 256.3
(3)
P 		54
(-2.8)
A 		46.7
(-3)
M 		49.1
(-2.9)
P 		210
C 215
(3)
P 		50.5
(-2.7)
A 		76.5
(-1.8)
P 		42.5
(-3)
M 		173
avr 250.7
(3) 		52.8
(-2.8) 		58
(-2.6) 		44.6
(-3) 		206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 525
1 2 3 4 5 6 range
A 300.6
(-0.1)
P 		502.6
(3)
P 		367.1
(0.9)
P 		290.5
(-0.3)
P 		117.5
(-3)
P 		117.9
(-3)
P 		385
B 442.1
(3)
P 		439.1
(2.9)
P 		337.6
(0.4)
P 		207.3
(-2.8)
P 		199.4
(-3)
P 		227.7
(-2.3)
P 		243
C 642.8
(3)
P 		354
(-0.7)
P 		285.2
(-1.6)
P 		177.4
(-3)
P 		201.1
(-2.7)
P 		211.3
(-2.6)
P 		465
avr 461.8
(3) 		431.9
(2.4) 		330
(0.3) 		225.1
(-1.9) 		172.7
(-3) 		185.6
(-2.7) 		289
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183014_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15476
Sequence Type Exemplar sequence
Representative Public ID F59A7.2 NCBI
Target Description F59A7.2 /REP_DB=WormBase Gene ID /WP=CE11438 /TR=O16281 /GB=AAB65335.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071149(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071149 NCBI Caenorhabditis elegans F59A7.2 (F59A7.2) mRNA, complete cds. 11/11 None
SNAP00000021257 ENSEMBL cdna:SNAP chromosome:CEL140:V:2015745:2016337:-1 11/11 None
F59A7.2 ENSEMBL cdna:known chromosome:CEL140:V:2015663:2016366:-1 gene:F59A7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000021269 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2015744-2016337(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59A7.2
Entrez Gene 178682 Entrez gene
SwissProt O16281 EMBL-EBI
WormBase CE11438 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65335 Hypothetical protein F59A7.2 [Caenorhabditis elegans] ref|NP_503550.1| F59A7.2 [Caenorhabditis elegans] 9.0E-64
blast AAY86242 Hypothetical protein F59A7.11 [Caenorhabditis elegans] 1.0E-19
blast AAB52278 Hypothetical protein R08E5.4 [Caenorhabditis elegans] ref|NP_504043.1| R08E5.4 [Caenorhabditis elegans] 2.0E-15
Sequence
Target Sequence 
>C. ELEGANS:183014_AT
ttgctaaactccttgctatacaccactgttattttcgcgctagtttggggatatcctggg
catcacaccgaccatcttgaaggctgccctctaaacttgacccatcttcatgagaacatg
actatggaacatccacccagaaatgaaactagaactcgccgtggcctggacaatgatatc
gaaaatgctggagaatctgcagtgaatagtgttgaaaacgccggaaaaagtgcttgggag
accgctggcgagttaggagattctggcgtgcacacagttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTAAACTCCTTGCTATACACCA 23 703 16 Antisense
TATACACCACTGTTATTTTCGCGCT 594 659 32 Antisense
TTTTCGCGCTAGTTTGGGGATATCC 451 673 47 Antisense
TTTGGGGATATCCTGGGCATCACAC 630 665 59 Antisense
ACCATCTTGAAGGCTGCCCTCTAAA 370 83 86 Antisense
CCTCTAAACTTGACCCATCTTCATG 707 265 103 Antisense
AAATGAAACTAGAACTCGCCGTGGC 602 119 156 Antisense
TCGCCGTGGCCTGGACAATGATATC 320 599 171 Antisense
AAAAAGTGCTTGGGAGACCGCTGGC 487 129 240 Antisense
GACCGCTGGCGAGTTAGGAGATTCT 367 381 255 Antisense
GAGATTCTGGCGTGCACACAGTTGA 116 397 272 Antisense
Sequence Source Affymetrix Proprietary Database