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[183013_at]

Description T07C12.3 /REP_DB=WormBase Gene ID /WP=CE13353 /TR=Q22287 /GB=CAA98288.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 87      4grp_high_8_8 > 30      6grp_total > 88      4grp_total > 41      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 75.8
(-3)
P 		99.4
(2)
P 		104.2
(3)
P 		95.1
(1.1)
P 		28
B 70.8
(-0.2)
P 		96.1
(2.3)
P 		103.7
(3)
P 		41.6
(-3)
M 		62
C 73.5
(-3)
P 		95.3
(0.5)
P 		90.7
(-0.3)
P 		111.4
(3)
P 		38
avr 73.4
(-3) 		96.9
(2.4) 		99.5
(3) 		82.7
(-0.9) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 75.6
(-1.5)
A 		53.2
(-3)
P 		94
(-0.3)
P 		86.5
(-0.8)
P 		113.7
(1)
P 		144.7
(3)
P 		92
B 71.1
(-1.1)
P 		71
(-1.1)
P 		74
(-1)
P 		33.6
(-3)
A 		103.2
(0.5)
P 		154.2
(3)
P 		121
C 86.4
(-2.6)
P 		99.2
(-0.7)
P 		84
(-3)
P 		93
(-1.7)
P 		98.9
(-0.8)
P 		124.5
(3)
P 		41
avr 77.7
(-2.4) 		74.5
(-2.7) 		84
(-1.9) 		71
(-3) 		105.3
(-0.1) 		141.1
(3) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 27.6
(3)
P 		21.6
(0.4)
P 		27.2
(2.8)
P 		13.9
(-3)
P 		14
B 22.6
(2.4)
P 		23.7
(2.9)
P 		24
(3)
P 		8.9
(-3)
M 		15
C 24.3
(-0.4)
P 		27.4
(1)
P 		31.6
(3)
P 		18.8
(-3)
P 		13
avr 24.8
(1.8) 		24.2
(1.5) 		27.6
(3) 		13.9
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 13.9
(-3)
A 		18.9
(-1.6)
P 		20.5
(-1.1)
P 		21.9
(-0.7)
P 		34.3
(2.7)
P 		35.2
(3)
P 		21
B 24.7
(-1)
P 		23.6
(-1.2)
P 		18
(-1.9)
P 		8.9
(-3)
A 		41.9
(1.1)
P 		57.5
(3)
P 		49
C 32
(0.5)
P 		30.3
(0)
P 		21.4
(-2.3)
P 		18.7
(-3)
P 		32
(0.5)
P 		41.7
(3)
P 		23
avr 23.5
(-1.5) 		24.3
(-1.3) 		20
(-2.3) 		16.5
(-3) 		36.1
(1.2) 		44.8
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183013_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12477
Sequence Type Exemplar sequence
Representative Public ID T07C12.3 NCBI
Target Description T07C12.3 /REP_DB=WormBase Gene ID /WP=CE13353 /TR=Q22287 /GB=CAA98288.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171521(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171521 NCBI Caenorhabditis elegans T07C12.12 (T07C12.12) mRNA, complete cds. 11/11 None
SNAP00000001523 ENSEMBL cdna:SNAP chromosome:CEL140:V:9931573:9935591:-1 11/11 None
GENEFINDER00000001537 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9931960:9933324:-1 11/11 None
T07C12.12 ENSEMBL cdna:known chromosome:CEL140:V:9930394:9933332:-1 gene:T07C12.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9931959-9935591(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07C12.12
Entrez Gene 179383 Entrez gene
SwissProt Q8MM12 EMBL-EBI
WormBase CE31601 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGAAFFX.13129.1.S1_AT similar to chromosome 9 open reading frame 76 gga
CHICKEN:GGAAFFX.7991.1.S1_S_AT similar to chromosome 9 open reading frame 76 gga
HG-U133_PLUS_2:218979_AT chromosome 9 open reading frame 76 hs
HG-U133A:218979_AT chromosome 9 open reading frame 76 hs
HG-U133A_2:218979_AT chromosome 9 open reading frame 76 hs
HU35KSUBA:RC_AA236532_S_AT chromosome 9 open reading frame 76 hs
HU35KSUBA:AA306479_AT chromosome 9 open reading frame 76 hs
HU35KSUBC:RC_N68390_I_AT chromosome 9 open reading frame 76 hs
U133_X3P:G13376426_3P_AT chromosome 9 open reading frame 76 hs
HG-U95B:44010_AT chromosome 9 open reading frame 76 hs
HG-U95C:61467_AT chromosome 9 open reading frame 76 hs
MOE430A:1430805_S_AT RIKEN cDNA 4932432N11 gene mm
MOUSE430A_2:1430805_S_AT RIKEN cDNA 4932432N11 gene mm
MOUSE430_2:1430805_S_AT RIKEN cDNA 4932432N11 gene mm
MU11KSUBA:AA692678_I_AT RIKEN cDNA 4932432N11 gene mm
MU11KSUBA:AA692678_S_AT RIKEN cDNA 4932432N11 gene mm
MG-U74AV2:160736_AT RIKEN cDNA 4932432N11 gene mm
MG-U74CV2:167967_AT RIKEN cDNA 4932432N11 gene mm
MOE430A:1428625_A_AT RIKEN cDNA 4932432N11 gene mm
MOUSE430A_2:1428625_A_AT RIKEN cDNA 4932432N11 gene mm
MOUSE430_2:1428625_A_AT RIKEN cDNA 4932432N11 gene mm
MOE430B:1439248_AT RIKEN cDNA 4932432N11 gene mm
MOUSE430_2:1439248_AT RIKEN cDNA 4932432N11 gene mm
MOE430B:1438573_AT RIKEN cDNA 4932432N11 gene mm
MOUSE430_2:1438573_AT RIKEN cDNA 4932432N11 gene mm
MOE430B:1456696_X_AT RIKEN cDNA 4932432N11 gene mm
MOUSE430_2:1456696_X_AT RIKEN cDNA 4932432N11 gene mm
MU19KSUBC:TC37803_AT RIKEN cDNA 4932432N11 gene, mRNA (cDNA clone MGC:47027 IMAGE:4013563) mm
RG-U34C:RC_AI137410_AT similar to RIKEN cDNA 4932432N11 gene (predicted) rn
RAE230A:1373123_AT similar to RIKEN cDNA 4932432N11 gene (predicted) rn
RAT230_2:1373123_AT similar to RIKEN cDNA 4932432N11 gene (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAD44160 Hypothetical protein T07C12.12 [Caenorhabditis elegans] emb|CAD44151.1| Hypothetical protein T07C12.12 [Caenorhabditis elegans] ref|NP_741607.1| T07C12.12 [Caenorhabditis elegans] 0.0
blast T24644 hypothetical protein T07C12.3 - Caenorhabditis elegans 0.0
blast CAE72282 Hypothetical protein CBG19410 [Caenorhabditis briggsae] 8.0E-98
blast CAE72282 Hypothetical protein CBG19410 [Caenorhabditis briggsae] 1.0E-97
Sequence
Target Sequence 
>C. ELEGANS:183013_AT
caaaattcttatcgttccaccatgtgcaattcgaaaaggaacctttctgttgaagcgaaa
taattgtaaagttctaggtggacaagttcttccgcaattaaattcgttcgtaccagtaga
tcaatatgcacgacttttgggtatcaaaagtttaaacctatctgcgaaaaagaaggaaga
agttaaaacaactatgaattccaatacggatagtattcgaactgtcactaactctgtcat
tgattcttctttgccgaaattcattgatcgtcctgatccagttcagcctgcttcaggtcc
atcttcgttgatcagtagatattttcaaaagaaacaatgcccaccttccacttcaaaaga
accagaaacgcgtgaaatatcccctgatatttttaatgacgaggatggtgattatgactt
tgaaaatgagaacattgaatatgataatcgtcagtcaacttccatgaaagctaaaaatga
ttcagttcttgtttcttctctattgagtaaaatgaaagatgacacggaagattttgattt
gaatcggcgaatgaccaatcgatcaccgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAATTCTTATCGTTCCACCATGT 682 189 945 Antisense
GACAAGTTCTTCCGCAATTAAATTC 272 365 1025 Antisense
CGAACTGTCACTAACTCTGTCATTG 504 253 1162 Antisense
TCTGTCATTGATTCTTCTTTGCCGA 199 609 1177 Antisense
GCCGAAATTCATTGATCGTCCTGAT 502 285 1197 Antisense
CTTCAGGTCCATCTTCGTTGATCAG 469 221 1235 Antisense
CAAAAGAAACAATGCCCACCTTCCA 688 189 1270 Antisense
GAAACGCGTGAAATATCCCCTGATA 48 359 1309 Antisense
GATAATCGTCAGTCAACTTCCATGA 398 421 1387 Antisense
TGATTCAGTTCTTGTTTCTTCTCTA 130 565 1422 Antisense
GGCGAATGACCAATCGATCACCGAA 579 541 1490 Antisense
Sequence Source Affymetrix Proprietary Database