[Home] | [Total List]

[183012_at]

Description C18A3.3 /REP_DB=WormBase Gene ID /WP=CE01795 /TR=Q09958 /GB=AAA68370.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_highest_nonorm > 93      6grp_total > 68      4grp_total > 40      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 451
1 2 3 4 range
A 750.9
(-2)
P 		743
(-3)
P 		769
(0.2)
P 		791.3
(3)
P 		48
B 709
(-2.3)
P 		678
(-3)
P 		774.7
(-0.8)
P 		937.9
(3)
P 		260
C 681.9
(-0.1)
P 		750.1
(1)
P 		884.3
(3)
P 		487
(-3)
P 		397
avr 713.9
(-3) 		723.7
(-2.4) 		809.3
(3) 		738.7
(-1.4) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 687
1 2 3 4 5 6 range
A 457.8
(-0.5)
P 		399.6
(-1.3)
P 		291.5
(-3)
P 		444.6
(-0.7)
P 		409.4
(-1.2)
P 		683.8
(3)
P 		392
B 401.8
(-2.3)
P 		477.9
(-1.6)
P 		367
(-2.6)
P 		325.9
(-3)
P 		382.6
(-2.5)
P 		978.6
(3)
P 		653
C 419.1
(-2.4)
P 		543.3
(-0.4)
P 		381.1
(-3)
P 		412.1
(-2.5)
P 		390.1
(-2.9)
P 		761.4
(3)
P 		380
avr 426.2
(-2) 		473.6
(-1.3) 		346.5
(-3) 		394.2
(-2.4) 		394
(-2.4) 		807.9
(3) 		461
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 273.4
(3)
P 		161.3
(-1.3)
P 		201
(0.2)
P 		115.8
(-3)
P 		158
B 226.1
(3)
P 		167.4
(-3)
P 		179.5
(-1.8)
P 		199.9
(0.3)
P 		59
C 225.7
(0.8)
P 		215.7
(0.5)
P 		308.2
(3)
P 		82.1
(-3)
P 		226
avr 241.7
(3) 		181.5
(-0.3) 		229.6
(2.3) 		132.6
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 301
1 2 3 4 5 6 range
A 84.4
(-1.8)
P 		142.1
(1.6)
P 		63.5
(-3)
P 		112.8
(-0.1)
P 		123.5
(0.5)
P 		166.5
(3)
P 		103
B 139.8
(-1.8)
P 		159.1
(-1.4)
P 		89.1
(-2.9)
P 		86.3
(-3)
P 		155.4
(-1.5)
P 		364.9
(3)
P 		279
C 155.3
(-0.5)
P 		165.8
(-0.1)
P 		97
(-2.5)
P 		82.9
(-3)
P 		126.2
(-1.5)
P 		254.9
(3)
P 		172
avr 126.5
(-1.5) 		155.7
(-0.6) 		83.2
(-3) 		94
(-2.6) 		135
(-1.3) 		262.1
(3) 		179
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183012_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4133
Sequence Type Exemplar sequence
Representative Public ID C18A3.3 NCBI
Target Description C18A3.3 /REP_DB=WormBase Gene ID /WP=CE01795 /TR=Q09958 /GB=AAA68370.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062724(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062724 NCBI Caenorhabditis elegans C18A3.3 (C18A3.3) mRNA, complete cds. 11/11 None
SNAP00000023264 ENSEMBL cdna:SNAP chromosome:CEL140:II:5716273:5717835:1 11/11 None
GENEFINDER00000023278 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5714890:5717835:1 11/11 None
C18A3.3.2 ENSEMBL cdna:known chromosome:CEL140:II:5716271:5717940:1 gene:C18A3.3 11/11 None
C18A3.3.1 ENSEMBL cdna:known chromosome:CEL140:II:5716273:5717987:1 gene:C18A3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5714886-5717832(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18A3.3
Entrez Gene 173968 Entrez gene
SwissProt Q09958 EMBL-EBI
WormBase CE28890 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258316_AT rRNA processing protein-related at
CANINE:1583228_AT similar to Probable rRNA processing protein EBP2 (EBNA1 binding protein 2) (Nucleolar protein p40) cfa
CANINE_2:CFA.18733.1.S1_S_AT similar to Probable rRNA processing protein EBP2 (EBNA1 binding protein 2) (Nucleolar protein p40) cfa
CANINE_2:CFA.3338.1.A1_AT similar to Probable rRNA processing protein EBP2 (EBNA1 binding protein 2) (Nucleolar protein p40) cfa
CANINE_2:CFA.3338.1.A1_S_AT similar to Probable rRNA processing protein EBP2 (EBNA1 binding protein 2) (Nucleolar protein p40) cfa
DROSOPHILA_2:1638007_AT dm
DROSGENOME1:154456_AT dm
CHICKEN:GGA.13551.1.S1_AT EBNA1 binding protein 2 gga
HG-U133_PLUS_2:201323_AT EBNA1 binding protein 2 hs
HG-U133A:201323_AT EBNA1 binding protein 2 hs
HG-U133A_2:201323_AT EBNA1 binding protein 2 hs
HG-FOCUS:201323_AT EBNA1 binding protein 2 hs
HG-U95AV2:36135_AT EBNA1 binding protein 2 hs
HUGENEFL:U86602_AT EBNA1 binding protein 2 hs
U133_X3P:G5803110_3P_AT EBNA1 binding protein 2 hs
U133_X3P:HS2AFFX.1.382.S1_3P_S_AT EBNA1 binding protein 2 hs
MG-U74CV2:129134_S_AT EBNA1 binding protein 2 mm
MU11KSUBA:AA655934_AT EBNA1 binding protein 2 mm
MU11KSUBA:AA655934_G_AT EBNA1 binding protein 2 mm
MG-U74AV2:96297_AT EBNA1 binding protein 2 mm
MG-U74BV2:108238_AT EBNA1 binding protein 2 mm
MG-U74CV2:129135_R_AT EBNA1 binding protein 2 mm
MOE430A:1428315_AT EBNA1 binding protein 2 mm
MOUSE430A_2:1428315_AT EBNA1 binding protein 2 mm
MOUSE430_2:1428315_AT EBNA1 binding protein 2 mm
MOE430A:1437512_X_AT EBNA1 binding protein 2 mm
MOUSE430A_2:1437512_X_AT EBNA1 binding protein 2 mm
MOUSE430_2:1437512_X_AT EBNA1 binding protein 2 mm
MOE430B:1439898_AT EBNA1 binding protein 2 mm
MOUSE430_2:1439898_AT EBNA1 binding protein 2 mm
MOE430B:1457668_X_AT EBNA1 binding protein 2 mm
MOUSE430_2:1457668_X_AT EBNA1 binding protein 2 mm
MU19KSUBB:TC34389_AT EBNA1 binding protein 2 (Ebna1bp2), mRNA mm
RG-U34C:RC_AI104979_AT EBNA1 binding protein 2 (predicted) rn
RAE230A:1388397_AT EBNA1 binding protein 2 (predicted) rn
RAT230_2:1388397_AT EBNA1 binding protein 2 (predicted) rn
YEAST_2:1772847_AT Essential protein required for the maturation of 25S rRNA and 60S ribosomal subunit assembly, localizes to the nucleolus; constituent of 66S pre-ribosomal particles Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7046 ribosome biogenesis inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast T15543 hypothetical protein C18A3.3 - Caenorhabditis elegans 0.0
blast AAA68370 Hypothetical protein C18A3.3 [Caenorhabditis elegans] ref|NP_495125.1| C18A3.3 [Caenorhabditis elegans] sp|Q09958|EBP2_CAEEL Probable rRNA processing protein EBP2 homolog 1.0E-137
blast T15543 hypothetical protein C18A3.3 - Caenorhabditis elegans 1.0E-137
blast AAA68370 Hypothetical protein C18A3.3 [Caenorhabditis elegans] ref|NP_495125.1| C18A3.3 [Caenorhabditis elegans] sp|Q09958|EBP2_CAEEL Probable rRNA processing protein EBP2 homolog 1.0E-136
Protein Domains
Database ID Description E-Value
Pfam IPR008610 EMBL-EBI Eukaryotic rRNA processing 1.0E-126
Pfam IPR008610 EMBL-EBI Eukaryotic rRNA processing 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000023278 1 79-101
Sequence
Target Sequence 
>C. ELEGANS:183012_AT
aaaagctgttcaaatcgcctatccacgtcttctgaatcttggtatcaaagttctgcgacc
aacagattactatgcagagatggcaaagagtgacactcatatgcagaaagttcgcaagag
acttctcggaattcaagaaatgaaggaacgacaagaagcattccgccgtattcgtgaaga
gaaaaagtttgctgttaaggttcagaaggaagttctcgctgccaagaatacagagaaaaa
gaacctcgcagaagctgtgaagaagcacaaaaagggaatgaaacaacaattggaagatat
gctgaacaacgtgaaaagacatggtcttgatcaggatgatgacgcaccgactggagcatt
cggtgaccgtctaggaggaagaggtggtgccggaagaggtggagctggaagaggaggatc
gatgagaaacgcaggagaactcaaaagaaaactgaaatcggataaattcggttatggagg
aaagaagaagggaatgaagagaaacaacaaggagagcttcaatgatctgttcggagctcc
acgcggaggattcggtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGCTGTTCAAATCGCCTATCCA 116 133 792 Antisense
CCTATCCACGTCTTCTGAATCTTGG 474 269 809 Antisense
GGTATCAAAGTTCTGCGACCAACAG 344 503 832 Antisense
GAAAGTTCGCAAGAGACTTCTCGGA 160 361 897 Antisense
GAACGACAAGAAGCATTCCGCCGTA 31 347 937 Antisense
GCATTCCGCCGTATTCGTGAAGAGA 474 305 949 Antisense
GGTTCAGAAGGAAGTTCTCGCTGCC 107 507 990 Antisense
CGACTGGAGCATTCGGTGACCGTCT 381 251 1139 Antisense
GAGGTGGTGCCGGAAGAGGTGGAGC 545 401 1172 Antisense
TCAATGATCTGTTCGGAGCTCCACG 449 633 1310 Antisense
GAGCTCCACGCGGAGGATTCGGTGG 608 387 1325 Antisense
Sequence Source Affymetrix Proprietary Database