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[183011_at]

Description T17A3.7 /REP_DB=WormBase Gene ID /WP=CE19584 /TR=O76694 /GB=AAC26953.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 0.6
(-3)
A 		6.3
(-0.4)
A 		13.9
(3)
A 		3.9
(-1.5)
A 		13
B 10.9
(-0.4)
A 		1.5
(-3)
A 		2.5
(-2.7)
A 		23.2
(3)
A 		22
C 3.3
(-2.2)
A 		7.6
(3)
A 		6.9
(2.2)
A 		2.6
(-3)
A 		5
avr 4.9
(-3) 		5.1
(-2.8) 		7.8
(0.5) 		9.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 1.4
(-2.9)
A 		0.9
(-3)
A 		5.5
(-2.3)
A 		1.3
(-2.9)
A 		3
(-2.7)
A 		39.4
(3)
A 		39
B 1.5
(-3)
A 		1.2
(-3)
A 		2.3
(-2.9)
A 		1.5
(-3)
A 		6.4
(-2.4)
A 		54.6
(3)
P 		53
C 5.4
(-2.7)
A 		9
(-2.5)
A 		1.1
(-3)
A 		1.5
(-3)
A 		16
(-2)
A 		87.6
(3)
P 		87
avr 2.8
(-2.9) 		3.7
(-2.8) 		3
(-2.8) 		1.4
(-3) 		8.5
(-2.3) 		60.5
(3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.2
(-3)
A 		1.4
(-0.9)
A 		3.6
(3)
A 		0.6
(-2.3)
A 		3
B 3.5
(1)
A 		0.4
(-3)
A 		0.6
(-2.7)
A 		5
(3)
A 		5
C 1.1
(-0.9)
A 		2.2
(2.4)
A 		2.4
(3)
A 		0.4
(-3)
A 		2
avr 1.6
(-1) 		1.3
(-3) 		2.2
(3) 		2
(1.7) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.3
(-3)
A 		1.2
(-2.4)
A 		0.3
(-3)
A 		0.9
(-2.6)
A 		9.6
(3)
A 		9
B 0.5
(-3)
A 		0.4
(-3)
A 		0.6
(-2.9)
A 		0.4
(-3)
A 		2.6
(-2.3)
A 		20.4
(3)
P 		20
C 2
(-2.6)
A 		2.7
(-2.5)
A 		0.3
(-3)
A 		0.3
(-3)
A 		5.2
(-2)
A 		29.3
(3)
P 		29
avr 0.9
(-2.8) 		1.1
(-2.8) 		0.7
(-2.9) 		0.3
(-3) 		2.9
(-2.2) 		19.8
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183011_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8334
Sequence Type Exemplar sequence
Representative Public ID T17A3.7 NCBI
Target Description T17A3.7 /REP_DB=WormBase Gene ID /WP=CE19584 /TR=O76694 /GB=AAC26953.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064756(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064756 NCBI Caenorhabditis elegans T17A3.7 (T17A3.7) mRNA, complete cds. 11/11 None
GENEFINDER00000008197 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:139643:153417:-1 11/11 None
SNAP00000008188 ENSEMBL cdna:SNAP chromosome:CEL140:III:145543:147606:-1 11/11 None
T17A3.7 ENSEMBL cdna:known chromosome:CEL140:III:145543:146462:-1 gene:T17A3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:145542-146462(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T17A3.7
Entrez Gene 188568 Entrez gene
SwissProt O76694 EMBL-EBI
WormBase CE19584 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26954 Vegf (vascular endothelial growth factor) receptor family protein 2 [Caenorhabditis elegans] ref|NP_497158.2| VEGF (vascular endothelial growth factor) Receptor family member (ver-2) [Caenorhabditis elegans] 0.0
blast AAC26950 Hypothetical protein T17A3.3 [Caenorhabditis elegans] ref|NP_497154.1| T17A3.3 [Caenorhabditis elegans] 0.0
blast AAC26951 Hypothetical protein T17A3.4 [Caenorhabditis elegans] ref|NP_497155.1| T17A3.4 [Caenorhabditis elegans] 0.0
blast AAC26953 Hypothetical protein T17A3.7 [Caenorhabditis elegans] ref|NP_497157.1| T17A3.7 [Caenorhabditis elegans] 1.0E-165
blast AAC26953 Hypothetical protein T17A3.7 [Caenorhabditis elegans] ref|NP_497157.1| T17A3.7 [Caenorhabditis elegans] 1.0E-164
blast AAC26951 Hypothetical protein T17A3.4 [Caenorhabditis elegans] ref|NP_497155.1| T17A3.4 [Caenorhabditis elegans] 1.0E-123
blast AAC26951 Hypothetical protein T17A3.4 [Caenorhabditis elegans] ref|NP_497155.1| T17A3.4 [Caenorhabditis elegans] 1.0E-122
blast AAC26950 Hypothetical protein T17A3.3 [Caenorhabditis elegans] ref|NP_497154.1| T17A3.3 [Caenorhabditis elegans] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.1E-6
Pfam IPR000433 EMBL-EBI Zn-finger, ZZ type 2.6E-7
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.1E-6
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.5E-5
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.2E-7
Pfam IPR000719 EMBL-EBI Protein kinase 9.6E-52
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.1E-6
Pfam IPR000433 EMBL-EBI Zn-finger, ZZ type 2.6E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008197 1 298-320
Sequence
Target Sequence 
>C. ELEGANS:183011_AT
aattttccacaagactgaatttgatatgctcatgatttctttcgattacgtctacgacat
aatgttgcaagaattgaaggatttaaagtttcgaagattacatatttgggctaattgtca
cctgcaaagagttcccatgaaacttgaagatttgttggtttcaaatatttctgaaatgcg
tattgataaatcatttcccttaaatcaactatgcttgtttctaaaacattggattaatgg
atcaaacgaccgattggaatatctcgaaatgaatcttcccgccaattccactaaaaccca
atttatttcgattgccttgaagggtattgattatcaattggccccaaccgacaaggagtg
ggagagtgccaataatgggcttataaaaactactgtcgttaaagctggaggatttgatat
cagacggaacgatggaaccattgcaactgttactgtcgatgaaacctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTTCCACAAGACTGAATTTGAT 398 175 387 Antisense
GATATGCTCATGATTTCTTTCGATT 572 425 409 Antisense
GATTTCTTTCGATTACGTCTACGAC 248 427 420 Antisense
GATTACGTCTACGACATAATGTTGC 202 431 430 Antisense
AGTTTCGAAGATTACATATTTGGGC 678 61 473 Antisense
ATATTTGGGCTAATTGTCACCTGCA 606 19 488 Antisense
GTCACCTGCAAAGAGTTCCCATGAA 360 465 503 Antisense
GCGTATTGATAAATCATTTCCCTTA 306 291 564 Antisense
CATTTCCCTTAAATCAACTATGCTT 468 215 578 Antisense
TTGCCTTGAAGGGTATTGATTATCA 351 701 698 Antisense
CAACTGTTACTGTCGATGAAACCTT 54 189 830 Antisense
Sequence Source Affymetrix Proprietary Database