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[183010_s_at]

Description C24B9.3 /REP_DB=WormBase Gene ID /WP=CE17445 /TR=O76430 /GB=AAC19251.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 12      6grp_highest_nonorm > 22      6grp_total > 33      4grp_total > 61      6grp_high1_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1770
1 2 3 4 range
A 1692
(2.8)
P 		1738.8
(3)
P 		1587.3
(2.5)
P 		30
(-3)
A 		1709
B 1799.9
(3)
P 		1324.3
(1.4)
P 		1485.9
(1.9)
P 		58.7
(-3)
A 		1741
C 1710.9
(3)
P 		1429
(1.9)
P 		1268.1
(1.3)
P 		108.4
(-3)
A 		1603
avr 1734.3
(3) 		1497.4
(2.1) 		1447.1
(2) 		65.7
(-3) 		1669

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1791
1 2 3 4 5 6 range
A 2182.4
(3)
P 		2069.4
(2.5)
P 		2152.6
(2.9)
P 		1228.2
(-1.1)
P 		1029.5
(-2)
P 		802
(-3)
P 		1380
B 1788.6
(3)
P 		1765.3
(2.9)
P 		1706.2
(2.5)
P 		1177
(-0.6)
P 		1251.6
(-0.1)
P 		758
(-3)
P 		1031
C 2168.3
(2.2)
P 		1670.4
(0.5)
P 		2420.8
(3)
P 		1174.4
(-1.2)
P 		1187.6
(-1.1)
P 		630
(-3)
P 		1791
avr 2046.4
(2.8) 		1835
(1.9) 		2093.2
(3) 		1193.2
(-1) 		1156.2
(-1.1) 		730
(-3) 		1363
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 612
1 2 3 4 range
A 616
(3)
P 		377.4
(0.7)
P 		415
(1)
P 		4.4
(-3)
A 		612
B 574
(3)
P 		327.1
(0.4)
P 		344.3
(0.5)
P 		12.5
(-3)
A 		562
C 566.4
(3)
P 		410.8
(1.3)
P 		442
(1.6)
P 		18.3
(-3)
A 		548
avr 585.5
(3) 		371.8
(0.8) 		400.4
(1.1) 		11.7
(-3) 		574

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 608
1 2 3 4 5 6 range
A 402.3
(-0.7)
P 		736
(3)
P 		468.8
(0)
P 		311.5
(-1.7)
P 		310.7
(-1.7)
P 		195.3
(-3)
P 		541
B 622.4
(3)
P 		587.6
(2.4)
P 		414.3
(-0.7)
P 		311.7
(-2.5)
P 		508.5
(1)
P 		282.6
(-3)
P 		340
C 803.7
(3)
P 		509.7
(0)
P 		616.1
(1.1)
P 		236.2
(-2.7)
P 		384.3
(-1.2)
P 		210.9
(-3)
P 		593
avr 609.5
(3) 		611.1
(3) 		499.7
(1.2) 		286.5
(-2.1) 		401.2
(-0.3) 		229.6
(-3) 		382
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183010_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15398
Sequence Type Exemplar sequence
Representative Public ID C24B9.3 NCBI
Target Description C24B9.3 /REP_DB=WormBase Gene ID /WP=CE17445 /TR=O76430 /GB=AAC19251.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028500(11), NM_001028501(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028500 NCBI Caenorhabditis elegans C24B9.3a (C24B9.3) mRNA, complete cds. 11/11 None
NM_001028501 NCBI Caenorhabditis elegans C24B9.3b (C24B9.3) mRNA, complete cds. 11/11 None
SNAP00000038275 ENSEMBL cdna:SNAP chromosome:CEL140:V:2706868:2716334:-1 11/11 None
GENEFINDER00000038295 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2706856:2711646:-1 11/11 None
C24B9.3a ENSEMBL cdna:known chromosome:CEL140:V:2706588:2711395:-1 gene:C24B9.3 11/11 None
C24B9.3b ENSEMBL cdna:known chromosome:CEL140:V:2706856:2711646:-1 gene:C24B9.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2706855-2711646(-) 96.07 100.0
Public Domain and Genome References
Ensembl C24B9.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19251 Hypothetical protein C24B9.3a [Caenorhabditis elegans] ref|NP_001023671.1| C24B9.3a [Caenorhabditis elegans] 0.0
blast AAQ91906 Hypothetical protein C24B9.3b [Caenorhabditis elegans] ref|NP_001023672.1| C24B9.3b [Caenorhabditis elegans] 0.0
blast CAE62537 Hypothetical protein CBG06646 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 1.79999995231628
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 3.6E-33
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 9.2E-8
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 3.6E-33
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 9.2E-8
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 3.6E-33
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 9.2E-8
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000038275 7 70-87,100-122,137-159,180-202,229-251,272-293,303-325
Sequence
Target Sequence 
>C. ELEGANS:183010_S_AT
ccaacgacagtgccaactcaatctccatccgtttcgtgtccgttggcatcgctcacctat
gacgtgtacctgattgttgacgtgtccaataaggcgtcggccgccgactttgccgccatg
aagaccgccattcacaactttgttgctccatttgcaattggtgacttgggaacttccttc
gcactggtcactactggaatcgattctcagctcttcttcaccaacttcaagaatggacaa
tctagaggagacgttctcaccgccgtcgacggccttcttcaagacgacgtccccggacag
accctgaatctggctctcagcgcaattcaaggctatctggctcagcccacgtctgcatcc
aaaaagattatggcctatttcactagtaccacggcctgggacgtcagcccaatctccaca
atgaactcgctgaaatccaaatactcgctgagccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAACGACAGTGCCAACTCAATCTC 517 275 763 Antisense
TCGCTCACCTATGACGTGTACCTGA 28 601 811 Antisense
GTGTACCTGATTGTTGACGTGTCCA 184 485 826 Antisense
AATAAGGCGTCGGCCGCCGACTTTG 209 149 850 Antisense
GACCGCCATTCACAACTTTGTTGCT 686 381 885 Antisense
TGGTGACTTGGGAACTTCCTTCGCA 294 551 921 Antisense
ATCTAGAGGAGACGTTCTCACCGCC 98 33 1002 Antisense
TGAATCTGGCTCTCAGCGCAATTCA 216 575 1067 Antisense
GCGCAATTCAAGGCTATCTGGCTCA 73 289 1082 Antisense
CCAATCTCCACAATGAACTCGCTGA 486 277 1171 Antisense
TGAAATCCAAATACTCGCTGAGCCC 540 571 1193 Antisense
Sequence Source Affymetrix Proprietary Database