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[183008_at]

Description K01A2.6 /REP_DB=WormBase Gene ID /WP=CE19514 /TR=Q9TZ59 /GB=AAC69506.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 49      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 60.2
(0.8)
A 		86.8
(3)
A 		83.5
(2.7)
P 		13.6
(-3)
A 		73
B 52.8
(-3)
A 		72.5
(3)
A 		56.6
(-1.8)
A 		66.6
(1.2)
P 		20
C 20.5
(-3)
A 		60.9
(2.7)
M 		55.4
(1.9)
P 		63.4
(3)
P 		43
avr 44.5
(-3) 		73.4
(3) 		65.2
(1.3) 		47.9
(-2.3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 97.3
(3)
P 		59.5
(0.5)
A 		8.2
(-3)
A 		37.5
(-1)
A 		77.3
(1.7)
P 		47
(-0.4)
A 		89
B 46.3
(-0.6)
A 		76.9
(3)
P 		26.3
(-3)
A 		63.8
(1.4)
P 		66.2
(1.7)
P 		56.8
(0.6)
M 		51
C 69.5
(0.2)
A 		35.1
(-3)
A 		50.8
(-1.5)
A 		99.7
(3)
A 		72.6
(0.5)
P 		46.4
(-2)
M 		65
avr 71
(2.9) 		57.2
(1) 		28.4
(-3) 		67
(2.3) 		72
(3) 		50.1
(-0) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 21.9
(3)
A 		18.8
(2.1)
A 		21.8
(3)
P 		2
(-3)
A 		20
B 16.9
(1.8)
A 		17.9
(3)
A 		13.1
(-3)
A 		14.2
(-1.6)
P 		5
C 6.8
(-3)
A 		17.5
(2.1)
M 		19.3
(3)
P 		10.7
(-1.1)
P 		13
avr 15.2
(1.1) 		18.1
(3) 		18.1
(3) 		9
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 17.9
(1.5)
P 		21.2
(2.4)
A 		1.8
(-3)
A 		9.5
(-0.9)
A 		23.3
(3)
P 		11.4
(-0.3)
A 		22
B 16.1
(-0.2)
A 		25.6
(2.6)
P 		6.4
(-3)
A 		16.9
(0.1)
P 		26.9
(3)
P 		21.2
(1.3)
M 		21
C 25.8
(3)
A 		10.7
(-3)
A 		12.9
(-2.1)
A 		20.1
(0.7)
A 		23.5
(2.1)
P 		15.5
(-1.1)
M 		15
avr 19.9
(1.4) 		19.2
(1.2) 		7
(-3) 		15.5
(-0.1) 		24.6
(3) 		16
(0.1) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183008_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5511
Sequence Type Exemplar sequence
Representative Public ID K01A2.6 NCBI
Target Description K01A2.6 /REP_DB=WormBase Gene ID /WP=CE19514 /TR=Q9TZ59 /GB=AAC69506.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061299(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061299 NCBI Caenorhabditis elegans K01A2.6 (K01A2.6) mRNA, complete cds. 11/11 None
GENEFINDER00000016842 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:299582:303601:1 11/11 None
K01A2.6 ENSEMBL cdna:known chromosome:CEL140:II:299582:300954:1 gene:K01A2.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016831 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:299581-300954(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01A2.6
Entrez Gene 186818 Entrez gene
SwissProt Q9TZ59 EMBL-EBI
WormBase CE19514 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69505 Hypothetical protein K01A2.5 [Caenorhabditis elegans] ref|NP_493701.1| K01A2.5 [Caenorhabditis elegans] 1.0E-160
blast CAE62869 Hypothetical protein CBG07052 [Caenorhabditis briggsae] 1.0E-146
blast AAK26377 putative alpha/beta hydrolase [Heterodera glycines] 4.0E-82
blast AAC69506 Hypothetical protein K01A2.6 [Caenorhabditis elegans] ref|NP_493700.1| K01A2.6 [Caenorhabditis elegans] 5.0E-81
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493700.1 1 78-100
K01A2.6 1 78-100
GENEFINDER00000016842 1 78-100
Sequence
Target Sequence 
>C. ELEGANS:183008_AT
atgctaaccgtctccaatgcaatcttcatcttcctcttcacaccacgtgtccgccgtgat
ctctcgaatttcatgtgccaagtaatggaaatttccattcgaaacggcacctctaacacc
atcccggtgctcaatgtgtccgcaaattacaacattaataataataaagcatacaatcca
aaaaccaagaatgacgattcctgcaagcaaatggaaagcacctctagatgttttgcaact
gcctaccatttcgctgctatgattcttctgggaatcgttttacttatttcctatgctttt
tgtcaaaatgtaccaactgtgattttgtccggagagtcgagaattgtttccaggaggatt
cttgaagtcgatctgagatcgacaaggacagctcacggatcaatgggagccgcttggaga
tccagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTAACCGTCTCCAATGCAATCT 495 41 13 Antisense
CGCCGTGATCTCTCGAATTTCATGT 456 257 64 Antisense
TTCCATTCGAAACGGCACCTCTAAC 686 695 105 Antisense
ACACCATCCCGGTGCTCAATGTGTC 707 107 128 Antisense
GAATGACGATTCCTGCAAGCAAATG 235 331 201 Antisense
GATGTTTTGCAACTGCCTACCATTT 538 409 239 Antisense
ATTTCGCTGCTATGATTCTTCTGGG 701 15 260 Antisense
ATCGTTTTACTTATTTCCTATGCTT 8 37 286 Antisense
GTACCAACTGTGATTTTGTCCGGAG 566 457 322 Antisense
GACAAGGACAGCTCACGGATCAATG 289 365 393 Antisense
ATGGGAGCCGCTTGGAGATCCAGTG 523 49 415 Antisense
Sequence Source Affymetrix Proprietary Database