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[183007_at]

Description F59A7.5 /REP_DB=WormBase Gene ID /WP=CE20897 /TR=O16279 /GB=AAD34667.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 01      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 61      6grp_total > 23      4grp_total > 22      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 633
1 2 3 4 range
A 663.5
(2.2)
P 		330.2
(-1.6)
P 		204
(-3)
P 		733.2
(3)
P 		529
B 828.6
(2.9)
P 		335.2
(-1.8)
P 		215.2
(-3)
P 		837.4
(3)
P 		622
C 704.2
(2.2)
P 		251.7
(-2.8)
P 		228.8
(-3)
P 		778.7
(3)
P 		550
avr 732.1
(2.5) 		305.7
(-2.1) 		216
(-3) 		783.1
(3) 		567

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 397
1 2 3 4 5 6 range
A 532.1
(1.6)
P 		436.2
(0.2)
P 		492.6
(1)
P 		624.4
(3)
P 		227
(-3)
P 		282.4
(-2.2)
P 		397
B 543.5
(3)
P 		419.2
(0.3)
P 		427.7
(0.5)
P 		374.7
(-0.7)
P 		269.6
(-3)
P 		314.8
(-2)
P 		274
C 500.9
(3)
P 		378.7
(-0.7)
P 		376.8
(-0.7)
P 		339.8
(-1.8)
P 		390.6
(-0.3)
P 		300.8
(-3)
P 		200
avr 525.5
(3) 		411.4
(0) 		432.4
(0.6) 		446.3
(0.9) 		295.7
(-3) 		299.3
(-2.9) 		230
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 214
1 2 3 4 range
A 241.6
(3)
P 		71.7
(-2.4)
P 		53.3
(-3)
P 		107.3
(-1.3)
P 		188
B 264.2
(3)
P 		82.8
(-2.1)
P 		49.9
(-3)
P 		178.5
(0.6)
P 		214
C 233.1
(3)
P 		72.4
(-3)
P 		79.7
(-2.7)
P 		131.3
(-0.8)
P 		161
avr 246.3
(3) 		75.6
(-2.5) 		61
(-3) 		139
(-0.5) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 98.1
(-1)
P 		155.1
(2.8)
P 		107.3
(-0.4)
P 		158.4
(3)
P 		68.5
(-3)
P 		68.8
(-3)
P 		90
B 189.1
(3)
P 		139.5
(-0.3)
P 		103.9
(-2.7)
P 		99.3
(-3)
P 		109.5
(-2.3)
P 		117.4
(-1.8)
P 		90
C 185.7
(3)
P 		115.5
(-0.6)
P 		95.9
(-1.6)
P 		68.3
(-3)
P 		126.4
(-0)
P 		100.7
(-1.3)
P 		117
avr 157.6
(3) 		136.7
(1) 		102.4
(-2.3) 		108.7
(-1.7) 		101.5
(-2.4) 		95.6
(-3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183007_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15699
Sequence Type Exemplar sequence
Representative Public ID F59A7.5 NCBI
Target Description F59A7.5 /REP_DB=WormBase Gene ID /WP=CE20897 /TR=O16279 /GB=AAD34667.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028830(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028830 NCBI Caenorhabditis elegans F59A7.5a (F59A7.5) mRNA, complete cds. 11/11 None
GENEFINDER00000021265 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2022417:2024489:1 10/11 None
F59A7.5a ENSEMBL cdna:known chromosome:CEL140:V:2022564:2024489:1 gene:F59A7.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028831 6/11 Cross Hyb Matching Probes None
SNAP00000021258 7/11 Cross Hyb Matching Probes None
F59A7.5b 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178683 2 1 NM_001028830 183007_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2022416-2024398(+) 100.0 100.0
Public Domain and Genome References
Ensembl F59A7.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast C88961 protein F59A7.5 [imported] - Caenorhabditis elegans 1.0E-123
blast AAD34667 Hypothetical protein F59A7.5a [Caenorhabditis elegans] ref|NP_001024001.1| F59A7.5a [Caenorhabditis elegans] 7.0E-94
blast AAD34667 Hypothetical protein F59A7.5a [Caenorhabditis elegans] ref|NP_001024001.1| F59A7.5a [Caenorhabditis elegans] 1.0E-87
blast C88961 protein F59A7.5 [imported] - Caenorhabditis elegans 5.0E-53
blast AAQ62449 Hypothetical protein F59A7.5b [Caenorhabditis elegans] ref|NP_001024002.1| F59A7.5b [Caenorhabditis elegans] 3.0E-40
blast AAQ62449 Hypothetical protein F59A7.5b [Caenorhabditis elegans] ref|NP_001024002.1| F59A7.5b [Caenorhabditis elegans] 5.0E-40
Sequence
Target Sequence 
>C. ELEGANS:183007_AT
aattgctacggcgatttgtctttttttggtcgttctgaccaaacattcgattggagcaca
aaatgatacgctggagatggagttggaatccaacataaccgtcgtcaaactcgaacatgg
actgaaattccaggcgcattccgagttcggcctaccggacaacatgaccgatctgttcaa
ctcgacggcggctgactctgaaggtgttcgaattgaaattcgtcaaactatcattttgcg
taatagaaataagacaggtgccaacaactcatccgtcctagaagcgccacgtgtcaagcg
gagcaataaaaatggtgagcagcggctcagaagaaaacgaccaaaaagacggccaagaag
accaccaccgaaaaaaaaagggggctacaaaaaagaaggtgaccacaaaaaagaagaagg
taacgacaaagaagccaaagaaaacgacaaaaaagaagttgacaacgaaaaaattggcaa
cgacaacgactcggtcgacgacaaaacatcgccaatttccagaccagcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGCTACGGCGATTTGTCTTTTT 548 177 168 Antisense
GGTCGTTCTGACCAAACATTCGATT 80 503 195 Antisense
GGAATCCAACATAACCGTCGTCAAA 61 533 252 Antisense
TGGACTGAAATTCCAGGCGCATTCC 423 547 285 Antisense
TTCGGCCTACCGGACAACATGACCG 327 693 313 Antisense
TGACCGATCTGTTCAACTCGACGGC 672 567 332 Antisense
GCGGCTGACTCTGAAGGTGTTCGAA 171 289 355 Antisense
TAAGACAGGTGCCAACAACTCATCC 615 637 417 Antisense
GGCAACGACAACGACTCGGTCGACG 706 533 643 Antisense
TCGGTCGACGACAAAACATCGCCAA 161 607 658 Antisense
ACATCGCCAATTTCCAGACCAGCGT 204 107 673 Antisense
Sequence Source Affymetrix Proprietary Database