[Home] | [Total List]

[183006_at]

Description Y39B6A.H /REP_DB=WormBase Gene ID /WP=CE21668 /TR=Q9NEI4 /GB=CAB61065.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 99      6grp_total > 95      4grp_total > 28      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 66.4
(-1.4)
P 		115.1
(3)
P 		49.3
(-3)
A 		72.3
(-0.9)
A 		66
B 65.6
(2.8)
P 		29.4
(-1.3)
A 		14.3
(-3)
A 		67.8
(3)
P 		54
C 60.9
(-1.1)
A 		59.3
(-1.2)
A 		28.9
(-3)
A 		127.6
(3)
A 		99
avr 64.3
(0.4) 		67.9
(0.8) 		30.8
(-3) 		89.2
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 8
(-3)
A 		50.6
(-0.2)
P 		42.4
(-0.8)
A 		46.8
(-0.5)
A 		100.2
(3)
P 		82
(1.8)
P 		92
B 54.5
(0.9)
P 		31.7
(-3)
A 		56
(1.2)
P 		65
(2.7)
P 		50.4
(0.2)
P 		66.8
(3)
P 		35
C 37.2
(-0.6)
A 		17.1
(-3)
A 		34.7
(-0.9)
A 		40.3
(-0.2)
A 		57.9
(1.9)
A 		66.7
(3)
P 		50
avr 33.2
(-3) 		33.1
(-3) 		44.4
(-1.2) 		50.7
(-0.3) 		69.5
(2.6) 		71.8
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 24.2
(2.7)
P 		25
(3)
P 		12.9
(-2)
A 		10.6
(-3)
A 		14
B 20.9
(3)
P 		7.3
(-1.6)
A 		3.3
(-3)
A 		14.4
(0.8)
P 		18
C 20.2
(2.3)
A 		17
(0.6)
A 		10.1
(-3)
A 		21.5
(3)
A 		11
avr 21.8
(3) 		16.4
(0.5) 		8.8
(-3) 		15.5
(0.1) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 1.5
(-3)
A 		18
(0.4)
P 		9.2
(-1.4)
A 		11.9
(-0.8)
A 		30.2
(3)
P 		20
(0.9)
P 		29
B 19
(0.5)
P 		10.5
(-3)
A 		13.6
(-1.7)
P 		17.2
(-0.2)
P 		20.5
(1.2)
P 		24.9
(3)
P 		14
C 13.8
(0)
A 		5.2
(-3)
A 		8.8
(-1.7)
A 		8.1
(-2)
A 		18.7
(1.7)
A 		22.3
(3)
P 		17
avr 11.4
(-2.6) 		11.2
(-2.7) 		10.5
(-3) 		12.4
(-2.1) 		23.1
(3) 		22.4
(2.7) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183006_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19445
Sequence Type Exemplar sequence
Representative Public ID Y39B6A.H NCBI
Target Description Y39B6A.H /REP_DB=WormBase Gene ID /WP=CE21668 /TR=Q9NEI4 /GB=CAB61065.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171570
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000030713 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18993431:18996267:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171570 7/11 Cross Hyb Matching Probes A 
SNAP00000030529 4/11 Cross Hyb Matching Probes None
Y39B6A.37 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18993430-19124324(+) 79.07 98.86
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD31829 Hypothetical protein Y39B6A.37 [Caenorhabditis elegans] ref|NP_741660.1| Y39B6A.37 [Caenorhabditis elegans] 1.0E-125
blast CAE56104 Hypothetical protein CBG23702 [Caenorhabditis briggsae] 8.0E-30
Sequence
Target Sequence 
>C. ELEGANS:183006_AT
aggacagcttttgtatggattggacagtgaattttatgttgataaggcgctgaaacccac
aaatgtcgaatttcacgataaaaatgacacgaaaagcttcaaaactggcgaatttgtaaa
aaacactagcaatcgggacattttgctccaaaaattccgttttccgacaaaaatccgggg
ttttcagcttaagaacacaacacagcgcttcggagtagccaccaccaccacaaaatgctc
tgaaaccgacgatgaatttccacaaggttatcaaatcattggtgatggaaatgttccatg
tgccaccacgtcagaagatgaggatgacgtcatcaccaccgataactttgatgacgtcac
cacgagctctggattatggattttattgttttttcctcgaagctatcgatttttctgcaa
atttatcgatttttctgcaaatttatcgattttctggaaatttgtcgaattttctgcaat
tttattgacttttctggaactttatcgatttttctctcatttaattgattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGACAGCTTTTGTATGGATTGGAC 339 17 444 Antisense
TAAGGCGCTGAAACCCACAAATGTC 133 637 486 Antisense
AAAAAACACTAGCAATCGGGACATT 199 111 561 Antisense
CAATCGGGACATTTTGCTCCAAAAA 590 181 573 Antisense
GGGTTTTCAGCTTAAGAACACAACA 202 495 621 Antisense
AACACAACACAGCGCTTCGGAGTAG 138 135 637 Antisense
CCACCACAAAATGCTCTGAAACCGA 86 273 668 Antisense
AAACCGACGATGAATTTCCACAAGG 417 123 686 Antisense
TATTGTTTTTTCCTCGAAGCTATCG 301 661 827 Antisense
GCAATTTTATTGACTTTTCTGGAAC 389 323 919 Antisense
GATTTTTCTCTCATTTAATTGATTT 464 429 950 Antisense
Sequence Source Affymetrix Proprietary Database