[Home] | [Total List]

[183004_at]

Description ZK185.1 /REP_DB=WormBase Gene ID /WP=CE17310 /TR=O44197 /GB=AAB88558.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 214.4
(3)
A 		71.3
(-2.5)
A 		58.8
(-3)
A 		140.7
(0.2)
A 		156
B 120.6
(3)
A 		54.2
(-2)
A 		40.6
(-3)
A 		42.8
(-2.8)
A 		80
C 113.4
(0.7)
A 		66.3
(-1.7)
A 		40.9
(-3)
A 		157
(3)
A 		116
avr 149.5
(3) 		63.9
(-2) 		46.8
(-3) 		113.5
(0.9) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 45.1
(3)
A 		8.8
(-3)
A 		36.6
(1.6)
A 		41
(2.3)
A 		43
(2.7)
A 		32.4
(0.9)
A 		36
B 101.9
(3)
A 		46.7
(-2.4)
A 		41.3
(-2.9)
A 		74.8
(0.4)
A 		54.7
(-1.6)
A 		40.1
(-3)
A 		62
C 114.2
(3)
A 		43.5
(-1.7)
A 		96
(1.8)
A 		107.5
(2.6)
A 		23
(-3)
A 		84.2
(1)
A 		91
avr 87.1
(3) 		33
(-3) 		58
(-0.2) 		74.4
(1.6) 		40.2
(-2.2) 		52.2
(-0.9) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 78.1
(3)
A 		15.5
(-3)
A 		15.4
(-3)
A 		20.6
(-2.5)
A 		63
B 38.4
(3)
A 		13.4
(-2.1)
A 		9.4
(-2.9)
A 		9.1
(-3)
A 		29
C 37.5
(3)
A 		19.1
(-1.8)
A 		14.3
(-3)
A 		26.5
(0.2)
A 		23
avr 51.3
(3) 		16
(-2.5) 		13
(-3) 		18.7
(-2.1) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 8.3
(0.2)
A 		3.1
(-3)
A 		8
(-0)
A 		10.4
(1.4)
A 		13
(3)
A 		7.9
(-0.1)
A 		10
B 35.5
(3)
A 		15.6
(-1.7)
A 		10
(-3)
A 		19.8
(-0.7)
A 		22.2
(-0.1)
A 		15
(-1.8)
A 		26
C 42.3
(3)
A 		13.3
(-2)
A 		24.4
(-0.1)
A 		21.6
(-0.6)
A 		7.4
(-3)
A 		28.2
(0.6)
A 		35
avr 28.7
(3) 		10.7
(-3) 		14.1
(-1.9) 		17.3
(-0.8) 		14.2
(-1.8) 		17
(-0.9) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183004_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10775
Sequence Type Exemplar sequence
Representative Public ID ZK185.1 NCBI
Target Description ZK185.1 /REP_DB=WormBase Gene ID /WP=CE17310 /TR=O44197 /GB=AAB88558.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068186(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068186 NCBI Caenorhabditis elegans ZK185.1 (ZK185.1) mRNA, complete cds. 11/11 None
SNAP00000040946 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4548548:4552241:1 11/11 None
GENEFINDER00000040951 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4548548:4552241:1 10/11 None
ZK185.1 ENSEMBL cdna:known chromosome:CEL140:IV:4548546:4551234:1 gene:ZK185.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4548553-4551240(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK185.1
Entrez Gene 191242 Entrez gene
SwissProt O44197 EMBL-EBI
WormBase CE17310 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB88558 Hypothetical protein ZK185.1 [Caenorhabditis elegans] ref|NP_500587.1| ZK185.1 [Caenorhabditis elegans] 1.0E-155
blast AAB88558 Hypothetical protein ZK185.1 [Caenorhabditis elegans] ref|NP_500587.1| ZK185.1 [Caenorhabditis elegans] 1.0E-154
blast AAB88558 Hypothetical protein ZK185.1 [Caenorhabditis elegans] ref|NP_500587.1| ZK185.1 [Caenorhabditis elegans] 1.0E-139
blast CAE58548 Hypothetical protein CBG01707 [Caenorhabditis briggsae] 2.0E-98
blast CAE58548 Hypothetical protein CBG01707 [Caenorhabditis briggsae] 1.0E-81
blast CAE58548 Hypothetical protein CBG01707 [Caenorhabditis briggsae] 4.0E-77
blast CAE58669 Hypothetical protein CBG01838 [Caenorhabditis briggsae] 1.0E-40
Sequence
Target Sequence 
>C. ELEGANS:183004_AT
aattactggaacatctcgtcgaagatcacggaagaccacaagacaaagcatggttcgaac
aattcgacacaattggaaccgatctgaaaaaagtattcgacaaggccattcggatacagg
ccgagaatagtgtcgtgaaaaagaaattccaaaattcaaacgatttactcgtctgcccca
cagattctccactggcaccatttctgttaatgcgacatcttcaagtgaattttcaagaag
tttctcagacgcttacagagggaattgtgctgaaattacagatcgcctccaccagctaca
cgattatcttttcattccataaagtcgacaaggctcgtcgtcgaattaagcgggaaatgg
ccagaaaatcgctggaaaggcgactccgcgtgctcgagcttcgctgcgccagaacatggg
ttccagatgacgatgtggtcttcaagaaaaagcggacaagtgaagagaataaggctctaa
tacaggctctgaaactgccagccacgagctctcatgatgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTACTGGAACATCTCGTCGAAGA 705 173 296 Antisense
TCAAACGATTTACTCGTCTGCCCCA 211 629 451 Antisense
CTCCACTGGCACCATTTCTGTTAAT 694 235 482 Antisense
GAAGTTTCTCAGACGCTTACAGAGG 321 337 532 Antisense
GCTGAAATTACAGATCGCCTCCACC 593 295 564 Antisense
CTCCACCAGCTACACGATTATCTTT 397 235 582 Antisense
GACAAGGCTCGTCGTCGAATTAAGC 481 363 622 Antisense
ATCGCTGGAAAGGCGACTCCGCGTG 115 37 663 Antisense
TTCGCTGCGCCAGAACATGGGTTCC 74 697 695 Antisense
TACAGGCTCTGAAACTGCCAGCCAC 40 645 776 Antisense
CCAGCCACGAGCTCTCATGATGATA 483 273 793 Antisense
Sequence Source Affymetrix Proprietary Database