[Home] | [Total List]

[183002_at]

Description R02D3.6 /REP_DB=WormBase Gene ID /WP=CE18100 /TR=O44504 /GB=AAB94146.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 09      6grp_cgc > 87      6grp_cgc_sub > 05      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 18.3
(-3)
A
51.3
(-0.2)
A
41.3
(-1)
A
88.6
(3)
A
70
B 37.8
(1.3)
A
27.8
(-0.1)
A
7
(-3)
A
49.8
(3)
A
43
C 18.1
(-2.1)
A
5.8
(-3)
A
41.9
(-0.3)
A
84.8
(3)
A
79
avr 24.7
(-3)
28.3
(-2.6)
30.1
(-2.3)
74.4
(3)
50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3940
1 2 3 4 5 6 range
A 7
(-3)
A
9.3
(-3)
A
87.3
(-2.9)
A
3947.3
(3)
P
2840.1
(1.3)
P
183.8
(-2.7)
P
3940
B 15.7
(-3)
A
31.9
(-3)
A
139
(-2.8)
M
3448.9
(3)
P
3216.8
(2.6)
P
179.7
(-2.7)
P
3433
C 24.9
(-3)
A
31.6
(-3)
A
125.6
(-2.8)
A
2911.9
(2.3)
P
3279.7
(3)
P
227.4
(-2.6)
P
3255
avr 15.9
(-3)
24.3
(-3)
117.3
(-2.8)
3436
(3)
3112.2
(2.4)
197
(-2.7)
3420
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.7
(-3)
A
11.1
(1.2)
A
10.8
(0.9)
A
13
(3)
A
6
B 12.1
(3)
A
6.9
(0)
A
1.6
(-3)
A
10.6
(2.1)
A
11
C 6
(-1)
A
1.7
(-3)
A
14.6
(3)
A
14.3
(2.9)
A
13
avr 8.3
(-1.3)
6.6
(-3)
9
(-0.6)
12.6
(3)
6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1306
1 2 3 4 5 6 range
A 1.3
(-3)
A
3.3
(-3)
A
19
(-2.9)
A
1001.1
(3)
P
857
(2.1)
P
44.8
(-2.7)
P
1000
B 5.5
(-3)
A
10.6
(-3)
A
33.7
(-2.9)
M
913.5
(1.2)
P
1306.9
(3)
P
67
(-2.7)
P
1301
C 9.2
(-3)
A
9.6
(-3)
A
32
(-2.9)
A
585.6
(0.3)
P
1061.3
(3)
P
76.1
(-2.6)
P
1052
avr 5.3
(-3)
7.8
(-3)
28.2
(-2.9)
833.4
(1.6)
1075.1
(3)
62.6
(-2.7)
1070
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183002_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11037
Sequence Type Exemplar sequence
Representative Public ID R02D3.6 NCBI
Target Description R02D3.6 /REP_DB=WormBase Gene ID /WP=CE18100 /TR=O44504 /GB=AAB94146.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067484(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_067484 NCBI Caenorhabditis elegans GRound-Like (grd related) family member (grl-19) (grl-19) mRNA, complete cds. 11/11 None
SNAP00000011018 ENSEMBL cdna:SNAP chromosome:CEL140:IV:251970:252705:-1 10/11 None
GENEFINDER00000011023 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:251970:252534:-1 11/11 None
R02D3.6 ENSEMBL cdna:known chromosome:CEL140:IV:251970:252534:-1 gene:R02D3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:251969-252534(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol grl-19
Ensembl R02D3.6
Entrez Gene 176843 Entrez gene
SwissProt O44504 EMBL-EBI
WormBase CE18100 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94146 Ground-like (grd related) protein 19 [Caenorhabditis elegans] ref|NP_499885.1| GRound-Like (grd related) family member (grl-19) [Caenorhabditis elegans] 4.0E-64
blast AAB94146 Ground-like (grd related) protein 19 [Caenorhabditis elegans] ref|NP_499885.1| GRound-Like (grd related) family member (grl-19) [Caenorhabditis elegans] 4.0E-60
blast CAE74730 Hypothetical protein CBG22548 [Caenorhabditis briggsae] 4.0E-42
blast CAE74730 Hypothetical protein CBG22548 [Caenorhabditis briggsae] 2.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 1.4E-17
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 3.7E-12
Sequence
Target Sequence
>C. ELEGANS:183002_AT
atctatatgccacgttgcattcgcatttttctttccaagagtcacacctaatgatggatg
tggttgtggatgtggaggaggtggaggtggaggaggttgttgtgcaccaccaccaccacc
gccagtgtgtggcggttgtggctgcggaggccgtaaaaagagagaaatcggacatgtcaa
aggacacttggcacatagagataatgatcaggaatggaataatcaatgcaacagcttaga
gttttcggatgtaatagtaaagcatctccgaacgaaatcattgtcgacatctcgagattt
catttacaaagaacttgacacagcattcccagactcaatgttcactgtattttgtctcca
aaactctactgtttca


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
ATCTATATGCCACGTTGCATTCGCA 12 33 39 Antisense
TGCATTCGCATTTTTCTTTCCAAGA 517 579 54 Antisense
TTCTTTCCAAGAGTCACACCTAATG 427 691 67 Antisense
TGGAGGAGGTTGTTGTGCACCACCA 211 549 126 Antisense
GCCAGTGTGTGGCGGTTGTGGCTGC 296 281 159 Antisense
GGTTGTGGCTGCGGAGGCCGTAAAA 250 507 172 Antisense
AGCATCTCCGAACGAAATCATTGTC 480 77 299 Antisense
GTCGACATCTCGAGATTTCATTTAC 375 473 321 Antisense
AAGAACTTGACACAGCATTCCCAGA 247 153 347 Antisense
GCATTCCCAGACTCAATGTTCACTG 475 307 361 Antisense
TTGTCTCCAAAACTCTACTGTTTCA 688 705 390 Antisense
Sequence Source Affymetrix Proprietary Database