[Home] | [Total List]

[183001_s_at]

Description F55D12.2 /REP_DB=WormBase Gene ID /WP=CE17875 /TR=Q20833 /GB=CAA99862.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 61      6grp_total > 20      4grp_total > 57      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 494
1 2 3 4 range
A 306
(-1.9)
P 		644.4
(3)
P 		643.3
(3)
P 		233.8
(-3)
P 		411
B 324.9
(-1.8)
P 		529.3
(1.6)
P 		611.9
(3)
P 		254.4
(-3)
P 		358
C 303.1
(-3)
P 		623.8
(1.5)
P 		727.4
(3)
P 		332.4
(-2.6)
P 		424
avr 311.3
(-2.4) 		599.2
(2) 		660.9
(3) 		273.5
(-3) 		387

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 478
1 2 3 4 5 6 range
A 265.8
(-2.6)
P 		705.5
(3)
P 		682.9
(2.7)
P 		437.4
(-0.4)
P 		233.8
(-3)
P 		242.8
(-2.9)
P 		472
B 324.4
(-3)
P 		564.5
(2.1)
P 		608.1
(3)
P 		343
(-2.6)
P 		356.7
(-2.3)
P 		382
(-1.8)
P 		284
C 265.5
(-2.5)
P 		683.6
(3)
P 		514.2
(0.8)
P 		405.9
(-0.7)
P 		227.5
(-3)
P 		395.8
(-0.8)
P 		456
avr 285.2
(-2.8) 		651.2
(3) 		601.7
(2.2) 		395.4
(-1.1) 		272.7
(-3) 		340.2
(-1.9) 		379
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 111.4
(0.5)
P 		139.9
(1.7)
P 		168.2
(3)
P 		34.2
(-3)
P 		134
B 103.6
(0.4)
P 		130.7
(2.2)
P 		141.8
(3)
P 		54.2
(-3)
P 		88
C 100.3
(-1.7)
P 		179.4
(0.7)
P 		253.5
(3)
P 		56
(-3)
P 		198
avr 105.1
(-0.6) 		150
(1.4) 		187.8
(3) 		48.1
(-3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 49
(-3)
P 		250.9
(3)
P 		148.7
(-0)
P 		110.9
(-1.2)
P 		70.6
(-2.4)
P 		59.1
(-2.7)
P 		202
B 112.9
(-1.6)
P 		187.9
(3)
P 		147.7
(0.5)
P 		90.9
(-3)
P 		144.9
(0.3)
P 		142.4
(0.2)
P 		97
C 98.4
(-1.9)
P 		208.6
(3)
P 		130.9
(-0.5)
P 		81.6
(-2.6)
P 		73.6
(-3)
P 		132.5
(-0.4)
P 		135
avr 86.8
(-3) 		215.8
(3) 		142.4
(-0.4) 		94.5
(-2.6) 		96.4
(-2.6) 		111.3
(-1.9) 		129
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183001_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.622
Sequence Type Exemplar sequence
Representative Public ID F55D12.2 NCBI
Target Description F55D12.2 /REP_DB=WormBase Gene ID /WP=CE17875 /TR=Q20833 /GB=CAA99862.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059778(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059778 NCBI Caenorhabditis elegans F55D12.2 (F55D12.2) mRNA, complete cds. 11/11 None
GENEFINDER00000016635 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7897683:7902842:1 11/11 None
SNAP00000016627 ENSEMBL cdna:SNAP chromosome:CEL140:I:7898863:7902842:1 11/11 None
F55D12.2 ENSEMBL cdna:known chromosome:CEL140:I:7897482:7902954:1 gene:F55D12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7897613-7902773(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55D12.2
Entrez Gene 172558 Entrez gene
SwissProt Q20833 EMBL-EBI
WormBase CE32439 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.19950.1.S1_S_AT similar to SEC14 and spectrin domains 1 cfa
CANINE_2:CFAAFFX.21778.1.S1_AT similar to SEC14 and spectrin domains 1 cfa
DROSOPHILA_2:1633334_AT dm
DROSGENOME1:148025_AT dm
CHICKEN:GGAAFFX.22781.1.S1_AT SEC14 and spectrin domains 1 gga
CHICKEN:GGA.4085.1.S1_AT SEC14 and spectrin domains 1 gga
HG-U133_PLUS_2:226763_AT SEC14 and spectrin domains 1 hs
HG-U133B:226763_AT SEC14 and spectrin domains 1 hs
U133_X3P:HS.50094.0.S1_3P_AT SEC14 and spectrin domains 1 hs
HG-U95C:54676_AT SEC14 and spectrin domains 1 hs
HG-U95C:64422_AT SEC14 and spectrin domains 1 hs
HG-U95B:42631_AT SEC14 and spectrin domains 1 hs
HG-U95D:77347_AT SEC14 and spectrin domains 1 hs
HU35KSUBA:Z21089_AT SEC14 and spectrin domains 1 hs
HU35KSUBC:RC_N49259_AT SEC14 and spectrin domains 1 hs
MG-U74BV2:111073_AT SEC14 and spectrin domains 1 mm
MG-U74BV2:116302_AT SEC14 and spectrin domains 1 mm
MOE430B:1429114_AT SEC14 and spectrin domains 1 mm
MOUSE430_2:1429114_AT SEC14 and spectrin domains 1 mm
MOE430B:1455549_AT SEC14 and spectrin domains 1 mm
MOUSE430_2:1455549_AT SEC14 and spectrin domains 1 mm
MU19KSUBC:TC41863_AT SEC14 and spectrin domains 1, mRNA (cDNA clone IMAGE:2581948) mm
RG-U34B:RC_AA946394_AT similar to SEC14 and spectrin domains 1 rn
RAE230A:1388991_AT similar to SEC14 and spectrin domains 1 rn
RAT230_2:1388991_AT similar to SEC14 and spectrin domains 1 rn
Protein Similarities
Method ID Description E-Value
blast CAA99862 Hypothetical protein F55D12.2 [Caenorhabditis elegans] ref|NP_492179.2| F55D12.2 [Caenorhabditis elegans] 0.0
blast CAE63734 Hypothetical protein CBG08262 [Caenorhabditis briggsae] 0.0
blast XP_421978 PREDICTED: similar to SEC14 and spectrin domains 1 [Gallus gallus] 2.0E-34
Sequence
Target Sequence 
>C. ELEGANS:183001_S_AT
gagaaattagaaactgcgtggaaagaattgaatttggcaattcaaaataacgagcaaaga
ttgaaagttgttgaatcttttatggctactcatcgacagatgatggaaagagtgaacgaa
attgagaaatctctgcgagaacgacttcgtgtcagtggaaagttaaattcaatagttctg
agcaccgaacggaaaagactaaaaaatgatatagaagaactatcgaatattggaaatatg
ctttctgctcagattaatgcagatcacgcaacaactctacaagatagacaaacagcagta
aaacaaatatctgataaaattaatgaagtaatgactgctcaacgaagaatggaaagttta
attattgaagaagaagaagctggatcaagttcctctggaaaagaagataagcattcaagc
cgaaaagctcgtccactatcaaaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAATTAGAAACTGCGTGGAAAG 557 389 1474 Antisense
TGAATCTTTTATGGCTACTCATCGA 510 575 1545 Antisense
ATCTCTGCGAGAACGACTTCGTGTC 201 33 1602 Antisense
AGAACGACTTCGTGTCAGTGGAAAG 222 59 1611 Antisense
AAATTCAATAGTTCTGAGCACCGAA 447 115 1638 Antisense
GTTCTGAGCACCGAACGGAAAAGAC 194 441 1648 Antisense
GGAAATATGCTTTCTGCTCAGATTA 185 523 1705 Antisense
CTGCTCAGATTAATGCAGATCACGC 601 235 1718 Antisense
GAAGTAATGACTGCTCAACGAAGAA 212 337 1798 Antisense
GCCGAAAAGCTCGTCCACTATCAAA 66 285 1892 Antisense
GAAAAGCTCGTCCACTATCAAAAGT 667 353 1895 Antisense
Sequence Source Affymetrix Proprietary Database