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[183000_at]

Description C15H11.5 /REP_DB=WormBase Gene ID /WP=CE08182 /TR=O17585 /GB=CAB02737.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 73      4grp_high_8_8 > 45      6grp_highest_nonorm > 72      6grp_total > 64      4grp_total > 51      6grp_cgc > 66      6grp_high1_sub > 03_04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 284
1 2 3 4 range
A 247.4
(-0.7)
P 		407.1
(3)
P 		317.8
(0.9)
P 		146.4
(-3)
A 		261
B 278
(0.6)
P 		379.6
(3)
P 		307.5
(1.3)
P 		123.1
(-3)
A 		257
C 250.9
(-1.4)
P 		389.8
(3)
P 		372.4
(2.5)
P 		198.4
(-3)
P 		191
avr 258.8
(-0.4) 		392.2
(3) 		332.6
(1.5) 		156
(-3) 		236

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 307.5
(-3)
P 		544.4
(3)
P 		427.3
(0)
P 		516.9
(2.3)
P 		373.5
(-1.3)
P 		442.8
(0.4)
P 		237
B 298.4
(-3)
P 		416
(1.2)
P 		465.9
(3)
P 		465.1
(3)
P 		355.1
(-1)
P 		460.4
(2.8)
P 		168
C 324.1
(-3)
P 		418.9
(-0.7)
P 		576.8
(3)
P 		512.4
(1.5)
P 		370.9
(-1.9)
P 		466.5
(0.4)
P 		253
avr 310
(-3) 		459.8
(1.8) 		490
(2.7) 		498.1
(3) 		366.5
(-1.2) 		456.6
(1.7) 		188
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 90.1
(3)
P 		88.4
(2.9)
P 		83.1
(2.4)
P 		21.4
(-3)
A 		69
B 88.6
(2.5)
P 		93.8
(3)
P 		71.3
(1)
P 		26.2
(-3)
A 		68
C 83.1
(0.1)
P 		112.1
(1.9)
P 		129.8
(3)
P 		33.4
(-3)
P 		96
avr 87.3
(2.1) 		98.1
(3) 		94.7
(2.7) 		27
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 56.7
(-3)
P 		193.6
(3)
P 		93.1
(-1.4)
P 		131.1
(0.3)
P 		112.7
(-0.5)
P 		107.8
(-0.8)
P 		137
B 103.8
(-3)
P 		138.5
(0.1)
P 		113.1
(-2.2)
P 		123.2
(-1.3)
P 		144.3
(0.6)
P 		171.7
(3)
P 		68
C 120.1
(-1.1)
P 		127.8
(-0.2)
P 		146.8
(1.9)
P 		103
(-3)
P 		120
(-1.1)
P 		156.2
(3)
P 		53
avr 93.5
(-3) 		153.3
(3) 		117.7
(-0.6) 		119.1
(-0.4) 		125.7
(0.2) 		145.2
(2.2) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183000_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13752
Sequence Type Exemplar sequence
Representative Public ID C15H11.5 NCBI
Target Description C15H11.5 /REP_DB=WormBase Gene ID /WP=CE08182 /TR=O17585 /GB=CAB02737.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074168(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074168 NCBI Caenorhabditis elegans C15H11.5 (C15H11.5) mRNA, complete cds. 11/11 None
SNAP00000026578 ENSEMBL cdna:SNAP chromosome:CEL140:V:14419635:14422612:1 11/11 None
GENEFINDER00000026588 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14420657:14422612:1 11/11 None
C15H11.5 ENSEMBL cdna:known chromosome:CEL140:V:14420565:14422669:1 gene:C15H11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14420683-14422612(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-338
Ensembl C15H11.5
Entrez Gene 179939 Entrez gene
SwissProt O17585 EMBL-EBI
WormBase CE08182 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6333 chromatin assembly or disassembly inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
785 chromatin inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3682 chromatin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02737 Hypothetical protein C15H11.5 [Caenorhabditis elegans] ref|NP_506569.1| C15H11.5 [Caenorhabditis elegans] 0.0
blast CAE65271 Hypothetical protein CBG10165 [Caenorhabditis briggsae] 7.0E-90
blast CAE66727 Hypothetical protein CBG12076 [Caenorhabditis briggsae] 1.0E-82
Sequence
Target Sequence 
>C. ELEGANS:183000_AT
tcgagattctccataccacttgaaatgagacaggaacccggatcgggctggtacatatta
tcagctatgtacagtctccccaatgttcctctgatggtcatgactggagtgattcgacca
gccgaagttgctcgagaatctttgcgaactgaaggaaaagaggttgcattcagttctttc
gtcgaaattccaggaacagatttgtgcctcgatcgtcgagagttctatgacttctcaaaa
ttcattccccacagctgtaatccaacatgcaatgttcgtttggttgaatcaggaaacgac
attcctgatctcgtgatttactcacgttttcccctcgacgaaggcaatggatatgtgatc
acccttgattatttcaaggctttcaaaaaagaggttgaggaatacttctcaaaggttgtt
gctccagacggcaaactcttccatctcctcgagaaggatatcgacttcgtgcagtgcaaa
tgtgagcacaagtgccgagagattgtatatatcgaccagtcagcgaagaagaagtccgag
aaggagaaactgacgtcgacgttcaatggcatgtctctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAGATTCTCCATACCACTTGAAA 415 603 895 Antisense
ATTATCAGCTATGTACAGTCTCCCC 681 13 951 Antisense
CCCCAATGTTCCTCTGATGGTCATG 507 261 972 Antisense
GACCAGCCGAAGTTGCTCGAGAATC 79 385 1010 Antisense
AGAGGTTGCATTCAGTTCTTTCGTC 670 65 1053 Antisense
GGAACAGATTTGTGCCTCGATCGTC 473 529 1087 Antisense
TGACTTCTCAAAATTCATTCCCCAC 629 571 1122 Antisense
TCCCCACAGCTGTAATCCAACATGC 700 595 1140 Antisense
GACATTCCTGATCTCGTGATTTACT 314 371 1192 Antisense
ACTCTTCCATCTCCTCGAGAAGGAT 314 101 1329 Antisense
GTCGACGTTCAATGGCATGTCTCTG 225 475 1449 Antisense
Sequence Source Affymetrix Proprietary Database