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[182999_at]

Description W06H8.2 /REP_DB=WormBase Gene ID /WP=CE21267 /TR=Q9N5C0 /GB=AAF39977.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 47      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 418
1 2 3 4 range
A 417.3
(3)
P 		71.2
(-2.2)
A 		42.4
(-2.6)
A 		15.2
(-3)
A 		402
B 430.3
(3)
P 		19.2
(-3)
A 		24.8
(-2.9)
A 		48.9
(-2.6)
A 		411
C 377.2
(3)
P 		12.3
(-3)
A 		63.6
(-2.2)
A 		15.7
(-2.9)
A 		365
avr 408.3
(3) 		34.2
(-2.9) 		43.6
(-2.7) 		26.6
(-3) 		382

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 222.1
(3)
P 		148.8
(-0.1)
A 		131.6
(-0.8)
A 		139.4
(-0.5)
A 		78.3
(-3)
A 		89.2
(-2.5)
A 		144
B 315.5
(3)
P 		144.1
(-1.7)
A 		162.5
(-1.2)
A 		124.5
(-2.3)
A 		97.3
(-3)
M 		126.7
(-2.2)
P 		218
C 246.5
(3)
P 		182.5
(0.4)
A 		132.5
(-1.7)
A 		169.8
(-0.2)
A 		100.8
(-3)
A 		116.8
(-2.3)
P 		146
avr 261.4
(3) 		158.5
(-0.6) 		142.2
(-1.2) 		144.6
(-1.1) 		92.1
(-3) 		110.9
(-2.3) 		169
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 151.9
(3)
P 		15.5
(-2.5)
A 		11.1
(-2.6)
A 		2.2
(-3)
A 		150
B 137.2
(3)
P 		4.7
(-3)
A 		5.7
(-3)
A 		10.4
(-2.7)
A 		133
C 124.9
(3)
P 		3.6
(-3)
A 		22.2
(-2)
A 		2.6
(-3)
A 		122
avr 138
(3) 		7.9
(-2.9) 		13
(-2.6) 		5.1
(-3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 41
(0.7)
P 		52.9
(3)
A 		28.7
(-1.7)
A 		35.3
(-0.4)
A 		23.6
(-2.6)
A 		21.7
(-3)
A 		31
B 109.8
(3)
P 		48
(-1.8)
A 		39.5
(-2.5)
A 		33
(-3)
A 		39.5
(-2.5)
M 		47.3
(-1.9)
P 		77
C 91.4
(3)
P 		55.7
(-0.6)
A 		33.7
(-2.9)
A 		34.2
(-2.8)
A 		32.6
(-3)
A 		39.1
(-2.3)
P 		59
avr 80.7
(3) 		52.2
(-0.5) 		34
(-2.7) 		34.2
(-2.7) 		31.9
(-3) 		36
(-2.5) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182999_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11727
Sequence Type Exemplar sequence
Representative Public ID W06H8.2 NCBI
Target Description W06H8.2 /REP_DB=WormBase Gene ID /WP=CE21267 /TR=Q9N5C0 /GB=AAF39977.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072188(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072188 NCBI Caenorhabditis elegans W06H8.2 (W06H8.2) mRNA, complete cds. 11/11 None
SNAP00000002854 ENSEMBL cdna:SNAP chromosome:CEL140:V:6209452:6211074:1 11/11 None
GENEFINDER00000002862 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6209452:6211074:1 11/11 None
W06H8.2 ENSEMBL cdna:known chromosome:CEL140:V:6209409:6211145:1 gene:W06H8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6209451-6211074(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06H8.2
Entrez Gene 179009 Entrez gene
SwissProt Q9N5C0 EMBL-EBI
WormBase CE21267 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39977 Hypothetical protein W06H8.2 [Caenorhabditis elegans] ref|NP_504589.1| W06H8.2 [Caenorhabditis elegans] 0.0
blast CAE71844 Hypothetical protein CBG18886 [Caenorhabditis briggsae] 0.0
blast CAE64513 Hypothetical protein CBG09249 [Caenorhabditis briggsae] 1.0E-179
Protein Domains
Database ID Description E-Value
Pfam IPR001155 EMBL-EBI NADH:flavin oxidoreductase/NADH oxidase 5.2E-40
Sequence
Target Sequence 
>C. ELEGANS:182999_AT
gaggcattcttcctggaattcgctgaaaagattcgcccagttttcaaaaacacagttgtc
tacttgactggaggtttccgtacagttaacgcaatggttgaagctatcaaatccggagcc
acacaaggaattggtttgggtagaccgattactgcggagccagatctcccaaagaaaatt
ctgcaaaagttggccccttcagctgtcttcgatgcaattgatcaaagtgaatttgtcctc
tcacttcttgcgagcaacactcaaattgaacaaatgggacggaactcgctgaaagaagca
aacaatgatgtcacttacggactcagtgacttcagtgatgaagatactgtgaaaagattt
ggaaaagcagttgaagaattcgccgaacttttgaaaattcaagcatctcgaggtgtcgca
attcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCATTCTTCCTGGAATTCGCTG 337 405 916 Antisense
TTCGCTGAAAAGATTCGCCCAGTTT 211 557 934 Antisense
GAGGTTTCCGTACAGTTAACGCAAT 212 401 986 Antisense
GAAGCTATCAAATCCGGAGCCACAC 371 341 1015 Antisense
GGGTAGACCGATTACTGCGGAGCCA 311 497 1053 Antisense
ACTGCGGAGCCAGATCTCCCAAAGA 133 97 1066 Antisense
CCTTCAGCTGTCTTCGATGCAATTG 440 269 1111 Antisense
AGTGAATTTGTCCTCTCACTTCTTG 679 59 1141 Antisense
CTCACTTCTTGCGAGCAACACTCAA 300 227 1155 Antisense
ACTTACGGACTCAGTGACTTCAGTG 213 101 1228 Antisense
AGCATCTCGAGGTGTCGCAATTCCA 204 79 1317 Antisense
Sequence Source Affymetrix Proprietary Database