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[182998_at]

Description Y51A2A.5 /REP_DB=WormBase Gene ID /WP=CE20276 /TR=Q9U273 /GB=CAB63374.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 57.2
(-1.6)
A 		40
(-3)
A 		51
(-2.1)
A 		112.6
(3)
A 		73
B 27.4
(-1.1)
A 		12
(-3)
A 		15.2
(-2.6)
A 		61.1
(3)
A 		49
C 27.2
(-2.1)
A 		21.6
(-2.4)
A 		11.7
(-3)
A 		110.5
(3)
P 		99
avr 37.3
(-1.9) 		24.5
(-3) 		26
(-2.9) 		94.7
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 15.6
(-2.6)
A 		12.5
(-3)
A 		28.1
(-0.9)
A 		56.3
(3)
A 		40
(0.8)
A 		18
(-2.2)
A 		44
B 15.8
(-1)
A 		40.9
(3)
A 		9
(-2.1)
A 		3.4
(-3)
A 		5.4
(-2.7)
A 		21.5
(-0.1)
A 		38
C 15
(-1.9)
A 		54.1
(3)
A 		6
(-3)
A 		13.1
(-2.1)
A 		50.2
(2.5)
A 		22.8
(-0.9)
A 		48
avr 15.5
(-2.7) 		35.8
(3) 		14.4
(-3) 		24.3
(-0.2) 		31.9
(1.9) 		20.8
(-1.2) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 20.8
(3)
A 		8.7
(-3)
A 		13.3
(-0.7)
A 		16.5
(0.9)
A 		12
B 8.7
(0.4)
A 		3
(-3)
A 		3.5
(-2.7)
A 		13
(3)
A 		10
C 9
(-1)
A 		6.2
(-2.1)
A 		4.1
(-3)
A 		18.6
(3)
P 		15
avr 12.8
(1.1) 		6
(-3) 		7
(-2.4) 		16
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.9
(-3)
A 		4.4
(-2.2)
A 		6.1
(-1.3)
A 		14.3
(3)
A 		12.1
(1.8)
A 		4.4
(-2.2)
A 		11
B 5.5
(-0.8)
A 		13.6
(3)
A 		2.2
(-2.4)
A 		0.9
(-3)
A 		2.2
(-2.4)
A 		8
(0.4)
A 		13
C 5.6
(-1.4)
A 		16.5
(3)
A 		1.5
(-3)
A 		2.6
(-2.6)
A 		16.2
(2.9)
A 		7.6
(-0.6)
A 		15
avr 4.7
(-2) 		11.5
(3) 		3.3
(-3) 		5.9
(-1.1) 		10.2
(2) 		6.7
(-0.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182998_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13778
Sequence Type Exemplar sequence
Representative Public ID Y51A2A.5 NCBI
Target Description Y51A2A.5 /REP_DB=WormBase Gene ID /WP=CE20276 /TR=Q9U273 /GB=CAB63374.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075180(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075180 NCBI Caenorhabditis elegans Y51A2A.5 (Y51A2A.5) mRNA, complete cds. 11/11 None
SNAP00000039472 ENSEMBL cdna:SNAP chromosome:CEL140:V:18301440:18303287:1 11/11 None
GENEFINDER00000039486 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18301380:18303287:1 11/11 None
Y51A2A.5 ENSEMBL cdna:known chromosome:CEL140:V:18301380:18303287:1 gene:Y51A2A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18301379-18303287(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51A2A.5
Entrez Gene 190121 Entrez gene
SwissProt Q9U273 EMBL-EBI
WormBase CE20276 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63374 Hypothetical protein Y51A2A.5 [Caenorhabditis elegans] ref|NP_507581.1| Y51A2A.5 [Caenorhabditis elegans] 0.0
blast NP_508317 F07G6.3 [Caenorhabditis elegans] gb|AAA96074.1| Hypothetical protein F07G6.3 [Caenorhabditis elegans] 2.0E-63
blast AAG23381 Hypothetical protein Y67D8C.2 [Caenorhabditis elegans] ref|NP_500290.1| Y67D8C.2 [Caenorhabditis elegans] 2.0E-61
Sequence
Target Sequence 
>C. ELEGANS:182998_AT
gtgaatgttacttctgatcccttgatcagttcatttgagaagcaggagacaccaggaata
atacaactggaatatttcacttgtggaaaaatgttagagaatgaagacactgatgccatt
ccccaattgaagagtatagattcattgaacaaccataaacagaaagccggactacaaaag
ccgggagatgtcgcctgtggcgtgatttttgaaaaaaaaattaagcgtcgtgtcaatgaa
gaaaaacgcccacgtaccgatcctccgtttgacttggttcctcagacaagctgtgaattg
gaaagtgtactggaatcggatatatggaactattggaattatgattgtgatacggtctcg
gattttttgaattggaaggatatgaattggaaagatatgagctggcacagattcgttcga
gaatctcgtcctcgcaaggatccaccttggagttcgtgtcgttcggaagttggcttatgc
tatggatggagatgggatgtcagtcaagagccattgtgtactccggcttggacgagctgc
cacgtcatgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAATGTTACTTCTGATCCCTTGA 527 481 1339 Antisense
CTGATGCCATTCCCCAATTGAAGAG 453 237 1448 Antisense
GTCGCCTGTGGCGTGATTTTTGAAA 299 475 1528 Antisense
TGAAGAAAAACGCCCACGTACCGAT 417 571 1575 Antisense
GACTTGGTTCCTCAGACAAGCTGTG 330 371 1609 Antisense
TATGATTGTGATACGGTCTCGGATT 266 655 1678 Antisense
GAGCTGGCACAGATTCGTTCGAGAA 281 387 1737 Antisense
GGAAGTTGGCTTATGCTATGGATGG 675 531 1803 Antisense
GGGATGTCAGTCAAGAGCCATTGTG 249 493 1832 Antisense
AGCCATTGTGTACTCCGGCTTGGAC 108 81 1847 Antisense
TTGGACGAGCTGCCACGTCATGTTC 632 705 1866 Antisense
Sequence Source Affymetrix Proprietary Database