[Home] | [Total List]

[182997_s_at]

Description F32B5.7 /REP_DB=WormBase Gene ID /WP=CE28231 /TR=O01849 /GB=AAB54209.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 29      4grp_highest_8_8 > 55      4grp_high_8_8 > 10      6grp_total > 28      4grp_total > 21      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 409
1 2 3 4 range
A 597.1
(0)
P 		481
(-1.7)
P 		390.1
(-3)
P 		799.3
(3)
P 		409
B 693.5
(3)
P 		511
(-0.7)
P 		396.9
(-3)
P 		580.3
(0.7)
P 		297
C 614.1
(3)
P 		526.4
(-0.9)
P 		478
(-3)
P 		590.9
(2)
P 		136
avr 634.9
(2.4) 		506.1
(-0.8) 		421.7
(-3) 		656.8
(3) 		235

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 341
1 2 3 4 5 6 range
A 451
(1.9)
P 		485.7
(3)
P 		290.4
(-3)
P 		304.7
(-2.6)
P 		392.2
(0.1)
P 		403.6
(0.5)
P 		195
B 450.1
(2.8)
P 		456.6
(3)
P 		273.6
(-2.9)
P 		269
(-3)
M 		366.5
(0.1)
P 		417.7
(1.8)
P 		188
C 470.6
(3)
P 		395.7
(1.6)
P 		299.8
(-0.1)
P 		144.7
(-3)
P 		380.4
(1.3)
P 		306.7
(-0)
P 		326
avr 457.2
(3) 		446
(2.7) 		287.9
(-1.7) 		239.5
(-3) 		379.7
(0.9) 		376
(0.8) 		218
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 217.4
(3)
P 		104.4
(-2.9)
P 		102
(-3)
P 		117
(-2.2)
P 		115
B 221.1
(3)
P 		126.2
(-1.4)
P 		92
(-3)
P 		123.7
(-1.5)
P 		129
C 203.3
(3)
P 		151.3
(-0)
P 		166.6
(0.9)
P 		99.6
(-3)
P 		104
avr 213.9
(3) 		127.3
(-2.2) 		120.2
(-2.6) 		113.4
(-3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 83.1
(-1.9)
P 		172.7
(3)
P 		63.2
(-3)
P 		77.3
(-2.2)
P 		118.4
(0)
P 		98.3
(-1.1)
P 		110
B 156.6
(3)
P 		152
(2.7)
P 		66.4
(-3)
P 		71.3
(-2.7)
M 		148.9
(2.5)
P 		155.8
(2.9)
P 		90
C 174.4
(3)
P 		120.7
(0.8)
P 		76.3
(-1.1)
P 		29.1
(-3)
P 		123.1
(0.9)
P 		102.7
(0)
P 		145
avr 138
(2.3) 		148.5
(3) 		68.6
(-2.4) 		59.2
(-3) 		130.1
(1.8) 		118.9
(1) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182997_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.130
Sequence Type Exemplar sequence
Representative Public ID F32B5.7 NCBI
Target Description F32B5.7 /REP_DB=WormBase Gene ID /WP=CE28231 /TR=O01849 /GB=AAB54209.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058621(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058621 NCBI Caenorhabditis elegans F32B5.7 (F32B5.7) mRNA, complete cds. 11/11 None
SNAP00000012557 ENSEMBL cdna:SNAP chromosome:CEL140:I:2673246:2678186:-1 11/11 None
GENEFINDER00000012564 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2673246:2682729:-1 11/11 None
F32B5.7.1 ENSEMBL cdna:known chromosome:CEL140:I:2672951:2682798:-1 gene:F32B5.7 11/11 A 
F32B5.7.2 ENSEMBL cdna:known chromosome:CEL140:I:2673050:2682798:-1 gene:F32B5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2673245-2682729(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F32B5.7
Entrez Gene 171828 Entrez gene
SwissProt O01849 EMBL-EBI
WormBase CE30526 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54209 Hypothetical protein F32B5.7 [Caenorhabditis elegans] ref|NP_491022.2| F32B5.7 [Caenorhabditis elegans] 0.0
blast CAE60491 Hypothetical protein CBG04106 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009836 EMBL-EBI Protein of unknown function DUF1399 3.1E-83
Pfam IPR009836 EMBL-EBI Protein of unknown function DUF1399 1.0E-33
Sequence
Target Sequence 
>C. ELEGANS:182997_S_AT
ttccacggttcatattgcgtctcacagcatggtggacacccgtgacgggaccaaatacac
agtacaagtgatccattcggcaccgctacttctatcgatgatcttggtatacgggcggga
gcaacggttgctctcaatggctcatttgatcggagcagattcacttccatctcgtgatca
attggataataatttggtgcctttcctgccgcatctctcaaacgccgaagaacgagcttt
tgtgatccttaacaaggaaggcgactacgcgatcataaaaggaaaatggtcaggattttc
aaggaaacaatcagcaacaaaagggcaaaaggcaaagccaggaaatcctggaaggcttca
tgttgatgcatttaatctgctgaagaatacagttcagaagctagaagttccatctgcaga
tggttctgctttgttcttaattggaggaggctgcgaaatcgctccaatgctaatgtgcgg
tgtcggctgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCACGGTTCATATTGCGTCTCAC 418 699 1464 Antisense
TGCGTCTCACAGCATGGTGGACACC 362 583 1479 Antisense
GTACAAGTGATCCATTCGGCACCGC 499 461 1525 Antisense
CACCGCTACTTCTATCGATGATCTT 417 201 1544 Antisense
GTATACGGGCGGGAGCAACGGTTGC 553 425 1570 Antisense
GATCGGAGCAGATTCACTTCCATCT 124 419 1611 Antisense
CGCATCTCTCAAACGCCGAAGAACG 399 255 1673 Antisense
AGAACGAGCTTTTGTGATCCTTAAC 360 71 1692 Antisense
ATGGTTCTGCTTTGTTCTTAATTGG 504 49 1883 Antisense
GAGGCTGCGAAATCGCTCCAATGCT 34 405 1910 Antisense
TGCTAATGTGCGGTGTCGGCTGTGA 429 579 1931 Antisense
Sequence Source Affymetrix Proprietary Database