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[182996_at]

Description F16B4.3 /REP_DB=WormBase Gene ID /WP=CE17013 /TR=O44633 /GB=AAB94234.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 40      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 48.7
(-1.2)
A 		52.4
(-0.8)
A 		95.5
(3)
A 		28.2
(-3)
A 		67
B 74.6
(3)
A 		38.4
(-3)
A 		47.7
(-1.5)
A 		64
(1.2)
A 		36
C 56.1
(-2.5)
A 		93.8
(2.9)
A 		52.6
(-3)
A 		94.6
(3)
A 		42
avr 59.8
(-3) 		61.5
(-1.1) 		65.3
(3) 		62.3
(-0.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 97
(3)
A 		29.2
(-2.4)
A 		42.3
(-1.4)
A 		25.2
(-2.8)
A 		22.1
(-3)
A 		41.7
(-1.4)
A 		75
B 59.6
(3)
A 		39.6
(-1.4)
A 		40.9
(-1.1)
A 		55.4
(2.1)
A 		35.2
(-2.4)
A 		32.3
(-3)
A 		27
C 84.8
(2.4)
A 		61.3
(0.8)
A 		20.6
(-2)
A 		92.8
(3)
P 		6.3
(-3)
A 		33.6
(-1.1)
A 		87
avr 80.5
(3) 		43.4
(-0.8) 		34.6
(-1.6) 		57.8
(0.7) 		21.2
(-3) 		35.9
(-1.5) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 17.7
(0.9)
A 		11.4
(-0.9)
A 		25
(3)
A 		4.1
(-3)
A 		21
B 23.8
(3)
A 		9.5
(-3)
A 		11.1
(-2.3)
A 		13.6
(-1.3)
A 		14
C 18.6
(-1.6)
A 		27
(3)
A 		18.3
(-1.7)
A 		16
(-3)
A 		11
avr 20
(3) 		16
(0.3) 		18.1
(1.7) 		11.2
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 17.9
(3)
A 		10.4
(-0.9)
A 		9.2
(-1.5)
A 		6.4
(-3)
A 		6.7
(-2.8)
A 		10.2
(-1)
A 		12
B 20.8
(3)
A 		13.2
(-1.2)
A 		9.9
(-3)
A 		14.7
(-0.4)
A 		14.3
(-0.6)
A 		12.1
(-1.8)
A 		11
C 31.4
(3)
A 		18.7
(0.4)
A 		5.3
(-2.3)
A 		18.7
(0.4)
P 		2
(-3)
A 		11.2
(-1.1)
A 		29
avr 23.4
(3) 		14.1
(-0.6) 		8.1
(-2.8) 		13.3
(-0.9) 		7.7
(-3) 		11.2
(-1.7) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182996_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15722
Sequence Type Exemplar sequence
Representative Public ID F16B4.3 NCBI
Target Description F16B4.3 /REP_DB=WormBase Gene ID /WP=CE17013 /TR=O44633 /GB=AAB94234.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071051(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071051 NCBI Caenorhabditis elegans F16B4.3 (F16B4.3) mRNA, complete cds. 10/11 None
SNAP00000004020 ENSEMBL cdna:SNAP chromosome:CEL140:V:1597014:1598518:1 10/11 None
GENEFINDER00000004039 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1596273:1598518:1 10/11 None
F16B4.3 ENSEMBL cdna:known chromosome:CEL140:V:1595973:1598518:1 gene:F16B4.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1595972-1598304(+) 95.03 95.03
Public Domain and Genome References
Gene Title
Ensembl F16B4.3
Entrez Gene 184558 Entrez gene
SwissProt O44633 EMBL-EBI
WormBase CE36825 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94234 Hypothetical protein F16B4.3 [Caenorhabditis elegans] ref|NP_503452.2| F16B4.3 [Caenorhabditis elegans] 0.0
blast AAB38096 Hypothetical protein T07F8.1 [Caenorhabditis elegans] ref|NP_495482.1| T07F8.1 [Caenorhabditis elegans] 1.0E-125
blast AAB38096 Hypothetical protein T07F8.1 [Caenorhabditis elegans] ref|NP_495482.1| T07F8.1 [Caenorhabditis elegans] 1.0E-100
blast AAB38096 Hypothetical protein T07F8.1 [Caenorhabditis elegans] ref|NP_495482.1| T07F8.1 [Caenorhabditis elegans] 3.0E-74
blast CAB63317 Hypothetical protein W03H9.1 [Caenorhabditis elegans] ref|NP_496955.1| W03H9.1 [Caenorhabditis elegans] 1.0E-37
blast CAB63317 Hypothetical protein W03H9.1 [Caenorhabditis elegans] ref|NP_496955.1| W03H9.1 [Caenorhabditis elegans] 1.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 1.0E-21
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 1.9E-26
Sequence
Target Sequence 
>C. ELEGANS:182996_AT
agcgttacgaagcccttgaactgtccgccaaatgtatccattgtaaagaggaaacaattt
tatccaaggaaaatttaattgagtacattgacgaagctcttgaaaataccaaagaaatta
tggcaagggagttgggagatcttgaagagctcacaggtgacagagaagagctcgaaaatt
ttctcaaaaaatccaaaggcgaaacaagacaaaagctggaagcagctctaactgaaattg
gatgtgatccaactgtatactatcaccagatgaatggtaaccaaattcggagccttctta
aaaaggaaaacatcgaaaaagttctgaataaaaccttcgacgtgatgactccataccttt
ccaagcgtaaattggttatgatagatcttggagagatcatgtcgtggagccgcaattcta
ttctgtcggaagcggatattcagtcacttgaaaaagctcttaattcattgcgagaacatc
ttcgagatgttcatcctcacatgagtgttctcccgactcttcatatgataaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCGTTACGAAGCCCTTGAACTGTC 701 57 1337 Antisense
TGAACTGTCCGCCAAATGTATCCAT 566 573 1353 Antisense
GATCCAACTGTATACTATCACCAGA 577 415 1582 Antisense
AAACCTTCGACGTGATGACTCCATA 141 125 1667 Antisense
ACTCCATACCTTTCCAAGCGTAAAT 463 99 1684 Antisense
GGAGAGATCATGTCGTGGAGCCGCA 232 519 1726 Antisense
GGAGCCGCAATTCTATTCTGTCGGA 13 523 1742 Antisense
GTCGGAAGCGGATATTCAGTCACTT 217 473 1761 Antisense
TCTTCGAGATGTTCATCCTCACATG 480 617 1815 Antisense
CATCCTCACATGAGTGTTCTCCCGA 289 211 1828 Antisense
TTCTCCCGACTCTTCATATGATAAA 612 693 1844 Antisense
Sequence Source Affymetrix Proprietary Database