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[182994_s_at]

Description F49E8.7 /REP_DB=WormBase Gene ID /WP=CE10798 /TR=Q20632 /GB=AAB03155.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 95      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 82      6grp_total > 86      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 347
1 2 3 4 range
A 324.8
(-2.9)
P 		320.9
(-3)
P 		357.7
(-2.1)
P 		568.8
(3)
P 		248
B 317.1
(-0.8)
P 		314.5
(-0.9)
P 		222.3
(-3)
P 		483.3
(3)
P 		261
C 354.1
(-2.5)
P 		339.3
(-3)
P 		378.9
(-1.8)
P 		534.2
(3)
P 		195
avr 332
(-2.6) 		324.9
(-2.8) 		319.6
(-3) 		528.8
(3) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 284
(-3)
P 		303.4
(-1.8)
P 		325.5
(-0.5)
P 		384.1
(3)
P 		314.3
(-1.2)
P 		381.6
(2.9)
P 		100
B 247.1
(-3)
P 		347.4
(-0.9)
P 		272.9
(-2.5)
P 		410.3
(0.4)
P 		426.1
(0.8)
P 		533
(3)
P 		286
C 258.5
(-2.7)
P 		248.7
(-3)
P 		380.6
(0.4)
P 		358.7
(-0.2)
P 		381.7
(0.4)
P 		481.3
(3)
P 		233
avr 263.2
(-3) 		299.8
(-1.9) 		326.3
(-1.1) 		384.4
(0.6) 		374
(0.3) 		465.3
(3) 		202
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 118.3
(3)
P 		69.7
(-3)
P 		93.5
(-0.1)
P 		83.3
(-1.3)
P 		49
B 101.1
(2.8)
P 		77.7
(0.1)
P 		51.5
(-3)
P 		103
(3)
P 		52
C 117.2
(0.9)
P 		97.5
(-1.9)
P 		132.1
(3)
P 		90.1
(-3)
P 		42
avr 112.2
(3) 		81.6
(-3) 		92.4
(-0.9) 		92.1
(-0.9) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 52.4
(-3)
P 		107.9
(3)
P 		70.9
(-1)
P 		97.4
(1.9)
P 		94.8
(1.6)
P 		92.9
(1.4)
P 		56
B 86
(-2.1)
P 		115.6
(-0.8)
P 		66.3
(-3)
P 		108.7
(-1.1)
P 		173.1
(1.8)
P 		198.8
(3)
P 		133
C 95.8
(-1.4)
P 		75.9
(-2.7)
P 		96.9
(-1.3)
P 		72.1
(-3)
P 		123.5
(0.5)
P 		161.1
(3)
P 		89
avr 78.1
(-3) 		99.8
(-1.2) 		78
(-3) 		92.7
(-1.8) 		130.5
(1.3) 		150.9
(3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182994_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9901
Sequence Type Exemplar sequence
Representative Public ID F49E8.7 NCBI
Target Description F49E8.7 /REP_DB=WormBase Gene ID /WP=CE10798 /TR=Q20632 /GB=AAB03155.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028041(11), NM_001028042(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028041 NCBI Caenorhabditis elegans F49E8.7a (F49E8.7) mRNA, complete cds. 11/11 None
NM_001028042 NCBI Caenorhabditis elegans F49E8.7b (F49E8.7) mRNA, complete cds. 11/11 None
SNAP00000021363 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7554630:7557175:-1 11/11 None
GENEFINDER00000021365 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7554630:7556347:-1 11/11 None
F49E8.7a.1 ENSEMBL cdna:known chromosome:CEL140:IV:7554473:7556411:-1 gene:F49E8.7 11/11 None
F49E8.7a.2 ENSEMBL cdna:known chromosome:CEL140:IV:7554485:7556349:-1 gene:F49E8.7 11/11 None
F49E8.7b ENSEMBL cdna:known chromosome:CEL140:IV:7554630:7556402:-1 gene:F49E8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7554635-7556353(-) 100.0 100.0
Public Domain and Genome References
Ensembl F49E8.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03155 Hypothetical protein F49E8.7a [Caenorhabditis elegans] ref|NP_001023212.1| F49E8.7a [Caenorhabditis elegans] 0.0
blast AAU05569 Hypothetical protein F49E8.7b [Caenorhabditis elegans] ref|NP_001023213.1| F49E8.7b [Caenorhabditis elegans] 0.0
blast CAE61914 Hypothetical protein CBG05910 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182994_S_AT
gacgaggatgttttcacttctaccactcttttcaactgtcccttgtttgatagatgcgaa
ccagtgtgtcttggagacgaagaaattattttgaattgcaaattgatcgttgattgctca
ggaagtcgtctttttgatcccatgttcaacgaggggaacgtctatactgctggcagagat
ttcttggtgttattcccaatgcaaacgatcatattgaaaagaattgtaccattgaaagtt
ggttcatcagtgaaagttcaattgaaaaaacaaatcgactacatagtgaacacattcttc
ttcaacgccagcgaacaccaagatcgagttgtaaactatgaactcacatttaccaactct
acagatgttcaaatgagtgcagtgaaaagatgtataccacaagtcgccaatggacgccaa
attggagtcaatttgaatgttgagcaagaaacaagagatttattcactgatcatggcaat
tcttgccctggaagacatatgttcgccagttttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGAGGATGTTTTCACTTCTACCA 275 377 979 Antisense
TCTTTTCAACTGTCCCTTGTTTGAT 486 615 1005 Antisense
GATGCGAACCAGTGTGTCTTGGAGA 206 415 1031 Antisense
GGAAGTCGTCTTTTTGATCCCATGT 82 533 1099 Antisense
CGAGGGGAACGTCTATACTGCTGGC 221 249 1128 Antisense
AGTGAACACATTCTTCTTCAACGCC 670 57 1263 Antisense
CAACGCCAGCGAACACCAAGATCGA 291 187 1281 Antisense
GAACTCACATTTACCAACTCTACAG 263 349 1318 Antisense
TACCACAAGTCGCCAATGGACGCCA 118 651 1373 Antisense
GGCAATTCTTGCCCTGGAAGACATA 14 535 1453 Antisense
AAGACATATGTTCGCCAGTTTTTTC 600 153 1470 Antisense
Sequence Source Affymetrix Proprietary Database