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[182992_at]

Description C10A4.7 /REP_DB=WormBase Gene ID /WP=CE02475 /TR=Q17893 /GB=AAC46521.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 2.6
(-2.9)
A 		3.1
(-2.7)
A 		2.1
(-3)
A 		24.8
(3)
A 		23
B 8.6
(0.7)
A 		11
(3)
A 		4.8
(-3)
A 		6.3
(-1.5)
A 		6
C 6
(1.6)
A 		1.6
(-3)
A 		2.9
(-1.6)
A 		7.3
(3)
A 		6
avr 5.7
(-1.5) 		5.2
(-1.8) 		3.3
(-3) 		12.8
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 3.6
(-2.3)
A 		6.8
(-1)
A 		17
(3)
A 		1.7
(-3)
A 		7.5
(-0.7)
A 		2.8
(-2.6)
A 		15
B 9.5
(-1.2)
A 		1.8
(-3)
A 		11.3
(-0.7)
A 		18
(0.8)
A 		27.1
(3)
A 		3.1
(-2.7)
A 		25
C 5.5
(-2.4)
A 		3.1
(-2.9)
A 		3.8
(-2.8)
A 		32.2
(3)
A 		2.9
(-3)
A 		2.8
(-3)
A 		29
avr 6.2
(-1.6) 		3.9
(-2.6) 		10.7
(0.2) 		17.3
(3) 		12.5
(1) 		2.9
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1
(-2.2)
A 		0.7
(-2.8)
A 		0.6
(-3)
A 		3.6
(3)
A 		3
B 2.8
(3)
A 		2.7
(2.6)
A 		1.1
(-3)
A 		1.3
(-2.3)
A 		2
C 2
(3)
A 		0.5
(-3)
A 		1
(-1)
A 		1.2
(-0.2)
A 		2
avr 1.9
(2.5) 		1.3
(-0.8) 		0.9
(-3) 		2
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.7
(-2.5)
A 		2.4
(0.6)
A 		3.7
(3)
A 		0.4
(-3)
A 		2.3
(0.5)
A 		0.7
(-2.5)
A 		3
B 3.3
(-1.4)
A 		0.6
(-3)
A 		2.7
(-1.8)
A 		4.8
(-0.6)
A 		11
(3)
A 		1.1
(-2.7)
A 		10
C 2.1
(-1.7)
A 		0.9
(-3)
A 		1
(-2.9)
A 		6.5
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		6
avr 2
(-1.3) 		1.3
(-2.4) 		2.5
(-0.5) 		3.9
(1.7) 		4.7
(3) 		0.9
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182992_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16683
Sequence Type Exemplar sequence
Representative Public ID C10A4.7 NCBI
Target Description C10A4.7 /REP_DB=WormBase Gene ID /WP=CE02475 /TR=Q17893 /GB=AAC46521.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076853(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076853 NCBI Caenorhabditis elegans C10A4.7 (C10A4.7) mRNA, complete cds. 11/11 None
SNAP00000027709 ENSEMBL cdna:SNAP chromosome:CEL140:X:7413615:7414245:-1 9/11 None
GENEFINDER00000027713 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7413615:7414242:-1 9/11 None
C10A4.7 ENSEMBL cdna:known chromosome:CEL140:X:7413615:7414981:-1 gene:C10A4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7413613-7414980(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C10A4.7
Entrez Gene 182488 Entrez gene
SwissProt Q17893 EMBL-EBI
WormBase CE02475 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46521 Hypothetical protein C10A4.7 [Caenorhabditis elegans] ref|NP_509254.1| C10A4.7 [Caenorhabditis elegans] 1.0E-101
blast AAC46521 Hypothetical protein C10A4.7 [Caenorhabditis elegans] ref|NP_509254.1| C10A4.7 [Caenorhabditis elegans] 2.0E-67
blast CAE65886 Hypothetical protein CBG11046 [Caenorhabditis briggsae] 4.0E-19
blast CAE65886 Hypothetical protein CBG11046 [Caenorhabditis briggsae] 1.0E-18
blast CAE65887 Hypothetical protein CBG11048 [Caenorhabditis briggsae] 4.0E-16
blast CAE65887 Hypothetical protein CBG11048 [Caenorhabditis briggsae] 3.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509254.1 3 52-74,84-106,142-164
C10A4.7 3 52-74,84-106,142-164
SNAP00000027709 4 20-42,52-74,95-117,127-149
GENEFINDER00000027713 4 19-41,51-73,94-116,126-148
Sequence
Target Sequence 
>C. ELEGANS:182992_AT
gatatgtacacatatttcccctgccaagaaatttgtttttttttttgctattgttttgta
tccaaaactattcgtgacttcgttcaaatcacagccggcgttgatctaactttgtcatgt
gtttcattcactattggagttgtcatcacatcagttcaaattttgaacagccgcattctc
ttcgccttcctgcttatcaccatcttcaaaaacatcttcatcaacagttcgattcttcta
attgttactaacactgactattacatcaacacagttcacaacatcataatgggaacatgc
ggtcaccatctctgctgggaagacgagaatgccaacgtcgcagctgccttcattcttctt
cttgcatcgggcactatcactttcttcacgatgctcacattcctgatcctaggcgtta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATGTACACATATTTCCCCTGCC 32 425 88 Antisense
GTATCCAAAACTATTCGTGACTTCG 24 455 145 Antisense
TGACTTCGTTCAAATCACAGCCGGC 300 571 162 Antisense
ACAGCCGGCGTTGATCTAACTTTGT 614 107 178 Antisense
TGGAGTTGTCATCACATCAGTTCAA 503 549 222 Antisense
AATTTTGAACAGCCGCATTCTCTTC 269 175 246 Antisense
ATCACCATCTTCAAAAACATCTTCA 362 29 283 Antisense
AATGGGAACATGCGGTCACCATCTC 615 163 375 Antisense
GACGAGAATGCCAACGTCGCAGCTG 296 379 409 Antisense
TTCTTGCATCGGGCACTATCACTTT 649 685 446 Antisense
CTCACATTCCTGATCCTAGGCGTTA 280 227 481 Antisense
Sequence Source Affymetrix Proprietary Database