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[182991_at]

Description H01G02.1 /REP_DB=WormBase Gene ID /WP=CE11554 /TR=O17902 /GB=CAB07421.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 27      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 47
(0.2)
A 		50.5
(0.5)
A 		9.3
(-3)
A 		80.9
(3)
A 		72
B 8.3
(-3)
A 		53.2
(2)
A 		33.2
(-0.2)
A 		62
(3)
A 		54
C 35.1
(-3)
A 		50.8
(3)
A 		39.3
(-1.4)
A 		45.1
(0.8)
A 		16
avr 30.1
(-2.5) 		51.5
(1.1) 		27.3
(-3) 		62.7
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 16.6
(-3)
A 		21.4
(-2.2)
A 		34.2
(-0.1)
A 		28.6
(-1)
A 		36.2
(0.2)
A 		53.4
(3)
M 		37
B 39.8
(2.9)
A 		17.4
(-2.9)
A 		23.4
(-1.3)
A 		16.9
(-3)
A 		35.6
(1.8)
A 		40.2
(3)
A 		23
C 31.6
(-1.4)
A 		33.1
(-1.2)
A 		64.6
(3)
A 		19.8
(-3)
A 		51.8
(1.3)
A 		28.2
(-1.9)
P 		45
avr 29.3
(-0.7) 		24
(-2.3) 		40.7
(2.8) 		21.8
(-3) 		41.2
(3) 		40.6
(2.8) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 17.1
(3)
A 		11
(0.5)
A 		2.4
(-3)
A 		11.8
(0.8)
A 		15
B 2.7
(-3)
A 		13.1
(2.9)
A 		7.7
(-0.1)
A 		13.2
(3)
A 		11
C 11.6
(0.4)
A 		14.6
(3)
A 		13.7
(2.2)
A 		7.6
(-3)
A 		7
avr 10.5
(0.1) 		12.9
(3) 		7.9
(-3) 		10.9
(0.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.1
(-3)
A 		7.6
(-0.3)
A 		7.5
(-0.3)
A 		7.2
(-0.5)
A 		10.9
(1.7)
A 		13
(3)
M 		10
B 13.8
(2.3)
A 		5.8
(-2.3)
A 		5.7
(-2.3)
A 		4.5
(-3)
A 		14.5
(2.7)
A 		15
(3)
A 		11
C 11.7
(0.6)
A 		10.1
(-0.1)
A 		16.5
(2.9)
A 		4
(-3)
A 		16.7
(3)
A 		9.4
(-0.4)
P 		13
avr 9.5
(-0.1) 		7.8
(-1.2) 		9.9
(0.2) 		5.2
(-3) 		14
(3) 		12.5
(2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182991_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9889
Sequence Type Exemplar sequence
Representative Public ID H01G02.1 NCBI
Target Description H01G02.1 /REP_DB=WormBase Gene ID /WP=CE11554 /TR=O17902 /GB=CAB07421.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069832(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069832 NCBI Caenorhabditis elegans H01G02.1 (H01G02.1) mRNA, complete cds. 11/11 None
H01G02.1 ENSEMBL cdna:known chromosome:CEL140:IV:11801789:11804086:-1 gene:H01G02.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027243 7/11 Cross Hyb Matching Probes None
SNAP00000027244 1/11 Cross Hyb Matching Probes None
GENEFINDER00000027245 5/11 Cross Hyb Matching Probes None
GENEFINDER00000027246 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11801794-11804092(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H01G02.1
Entrez Gene 186661 Entrez gene
SwissProt O17902 EMBL-EBI
WormBase CE11554 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07421 Hypothetical protein H01G02.1 [Caenorhabditis elegans] ref|NP_502233.1| H01G02.1 [Caenorhabditis elegans] 1.0E-158
blast CAE62128 Hypothetical protein CBG06172 [Caenorhabditis briggsae] 8.0E-42
blast CAA93458 Hypothetical protein F19B6.3 [Caenorhabditis elegans] ref|NP_502347.1| F19B6.3 [Caenorhabditis elegans] 7.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502233.1 1 7-29
H01G02.1 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:182991_AT
aagatgccgttggtgctggtggtaacaacaattataacggaggatttggatatccaggag
ttatgcaagttccgatcaattgcccatctgttcaattgacaattcaatttgggagagaaa
ctgtaaccctaacgcaaccactcggtgttcaaccaattgctttcaacgggacaatatcag
tggaaatggatcaagtaaaggagattatggacgtctggagcggttatcgctacaggggag
aaaagaagttgaaaaacattcataccaataatgctacttcgatcaggatggataagaata
agaaacgtagtactgagacatcagaaaagaagtttgttggcgtattcaccgagtgttcgc
ggaaaccatttgaggctaccatggtcaagaaactattccgtcgagaaggaatttatttca
aatcggttgaacattcgtcagtgccgattcaaaaacctgggcgcttttatttcaacgtgg
agctctcgcgcagtgaggatattaacaagatccaaatttccgatgattgggtggaacagt
ttaagatctctagtttgctcgaagactctccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGATGCCGTTGGTGCTGGTGGTAA 344 153 317 Antisense
TCCGATCAATTGCCCATCTGTTCAA 619 595 387 Antisense
GGAGAGAAACTGTAACCCTAACGCA 19 515 428 Antisense
TAACGCAACCACTCGGTGTTCAACC 260 593 446 Antisense
TATGGACGTCTGGAGCGGTTATCGC 119 653 522 Antisense
GTTGGCGTATTCACCGAGTGTTCGC 13 437 652 Antisense
GTTCGCGGAAACCATTTGAGGCTAC 622 441 671 Antisense
ATCGGTTGAACATTCGTCAGTGCCG 227 35 738 Antisense
ACCTGGGCGCTTTTATTTCAACGTG 416 87 771 Antisense
GGAGCTCTCGCGCAGTGAGGATATT 449 521 795 Antisense
TCTAGTTTGCTCGAAGACTCTCCAC 572 613 865 Antisense
Sequence Source Affymetrix Proprietary Database