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[182990_at]

Description F48C1.4 /REP_DB=WormBase Gene ID /WP=CE10738 /TR=O01569 /GB=AAB52347.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 09      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 7.7
(-3)
A 		12.8
(-2.6)
A 		22.5
(-1.9)
A 		88.3
(3)
A 		81
B 11.3
(-1.6)
A 		35
(3)
A 		7.2
(-2.3)
A 		3.8
(-3)
A 		31
C 7.3
(-3)
A 		11.6
(-2.7)
A 		24.6
(-1.7)
A 		85.4
(3)
A 		78
avr 8.8
(-3) 		19.8
(-1.7) 		18.1
(-1.9) 		59.2
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 11.9
(3)
A 		3.4
(-2.7)
A 		3
(-3)
A 		11.3
(2.6)
A 		3
(-3)
A 		6.1
(-0.9)
A 		9
B 10.7
(3)
A 		3.7
(-2.8)
A 		9.8
(2.3)
A 		3.5
(-3)
A 		4.5
(-2.2)
A 		5.7
(-1.2)
A 		7
C 6.5
(-1.9)
A 		4.7
(-2.6)
A 		6.3
(-2)
A 		4.4
(-2.7)
A 		3.6
(-3)
A 		19.6
(3)
A 		16
avr 9.7
(2.3) 		3.9
(-2.8) 		6.4
(-0.6) 		6.4
(-0.6) 		3.7
(-3) 		10.5
(3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.8
(-3)
A 		2.8
(-3)
A 		5.9
(-1.2)
A 		12.9
(3)
A 		10
B 3.6
(-0.9)
A 		8.7
(3)
A 		1.7
(-2.3)
A 		0.8
(-3)
A 		8
C 2.4
(-3)
A 		3.3
(-2.6)
A 		8.6
(0.1)
A 		14.4
(3)
A 		12
avr 2.9
(-3) 		4.9
(-1.2) 		5.4
(-0.7) 		9.4
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2.2
(1.2)
A 		1.2
(-1.4)
A 		0.6
(-3)
A 		2.9
(3)
A 		0.9
(-2.2)
A 		1.5
(-0.7)
A 		2
B 3.7
(3)
A 		1.2
(-2.4)
A 		2.4
(0.2)
A 		0.9
(-3)
A 		1.8
(-1.1)
A 		2.1
(-0.4)
A 		3
C 2.4
(-1.4)
A 		1.4
(-2.5)
A 		1.6
(-2.3)
A 		0.9
(-3)
A 		1.2
(-2.7)
A 		6.6
(3)
A 		6
avr 2.8
(1.3) 		1.3
(-3) 		1.5
(-2.4) 		1.6
(-2.1) 		1.3
(-3) 		3.4
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182990_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2216
Sequence Type Exemplar sequence
Representative Public ID F48C1.4 NCBI
Target Description F48C1.4 /REP_DB=WormBase Gene ID /WP=CE10738 /TR=O01569 /GB=AAB52347.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059162(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059162 NCBI Caenorhabditis elegans F48C1.4 (F48C1.4) mRNA, complete cds. 11/11 None
SNAP00000025981 ENSEMBL cdna:SNAP chromosome:CEL140:I:5313347:5313726:-1 11/11 None
F48C1.4 ENSEMBL cdna:known chromosome:CEL140:I:5313347:5313726:-1 gene:F48C1.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000025991 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5313346-5313726(-) 89.21 100.0
Public Domain and Genome References
Gene Title
Ensembl F48C1.4
Entrez Gene 172176 Entrez gene
SwissProt O01569 EMBL-EBI
WormBase CE10738 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52347 Hypothetical protein F48C1.4 [Caenorhabditis elegans] ref|NP_491563.1| F48C1.4 [Caenorhabditis elegans] 1.0E-39
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491563.1 1 67-86
F48C1.4 1 67-86
SNAP00000025981 1 67-86
Sequence
Target Sequence 
>C. ELEGANS:182990_AT
gccaggtgacgacaatgcagttggaacggagacaaatgaagataagccaactacatcaaa
tgcagtcaccgcagaaaatccgtcgagaggtgatgagtcgcagcaacagcaacaacaacc
gcagcagcaacagaaaagggtaaaaccaggacatcatcacttccttcgtgttcttttctg
caacaaaatccgaaaatcactcattcctctatgtctcttcatcttcgcctactatttcct
cgcttgtctaaccactcgaatgaaattgggaggcggggatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAGGTGACGACAATGCAGTTGGA 11 281 15 Antisense
GCCAACTACATCAAATGCAGTCACC 510 277 60 Antisense
GCAGTCACCGCAGAAAATCCGTCGA 445 311 76 Antisense
AATCCGTCGAGAGGTGATGAGTCGC 547 167 91 Antisense
GTGATGAGTCGCAGCAACAGCAACA 91 483 104 Antisense
ACAACCGCAGCAGCAACAGAAAAGG 112 113 129 Antisense
AAACCAGGACATCATCACTTCCTTC 600 125 157 Antisense
TCCTTCGTGTTCTTTTCTGCAACAA 109 591 176 Antisense
AAATCCGAAAATCACTCATTCCTCT 10 119 200 Antisense
CTCGCTTGTCTAACCACTCGAATGA 241 233 253 Antisense
GAATGAAATTGGGAGGCGGGGATGA 428 169 272 Antisense
Sequence Source Affymetrix Proprietary Database