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[182989_at]

Description Y22F5A.4 /REP_DB=WormBase Gene ID /WP=CE16605 /TR=O62415 /GB=CAA16323.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 16      4grp_high_8_8 > 60      6grp_highest_nonorm > 06      6grp_total > 52      4grp_total > 59      6grp_highest_sub > 03      6grp_cgc > 83      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14350
1 2 3 4 range
A 10932.4
(1.2)
P 		12348
(1.8)
P 		14931.7
(3)
P 		1841.4
(-3)
P 		13090
B 10872.5
(0.7)
P 		14676.2
(2.4)
P 		16157.3
(3)
P 		2098.2
(-3)
P 		14059
C 10962.6
(1.7)
P 		13510.3
(3)
P 		13232.4
(2.9)
P 		1807.7
(-3)
P 		11703
avr 10922.5
(1.2) 		13511.5
(2.4) 		14773.8
(3) 		1915.8
(-3) 		12858

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7970
1 2 3 4 5 6 range
A 9578.4
(-0.8)
P 		8779.8
(-1.4)
P 		14568.4
(3)
P 		10490.7
(-0.1)
P 		7992
(-2)
P 		6598.8
(-3)
P 		7970
B 10387.8
(0.7)
P 		9078.9
(-0.8)
P 		12403.1
(3)
P 		11587.5
(2.1)
P 		8539.2
(-1.5)
P 		7193.6
(-3)
P 		5210
C 8068.6
(-1.3)
P 		9099.7
(0.3)
P 		10778.2
(3)
P 		9343.3
(0.7)
P 		8063.4
(-1.3)
P 		7006.7
(-3)
P 		3772
avr 9344.9
(-0.4) 		8986.1
(-0.8) 		12583.2
(3) 		10473.8
(0.8) 		8198.2
(-1.7) 		6933
(-3) 		5650
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4342
1 2 3 4 range
A 3980.5
(3)
P 		2680.4
(0.9)
P 		3903.4
(2.9)
P 		269.5
(-3)
P 		3711
B 3467.1
(2.5)
P 		3624.7
(2.8)
P 		3744
(3)
P 		447.1
(-3)
P 		3297
C 3628.9
(1.6)
P 		3884.3
(2)
P 		4611.9
(3)
P 		304.8
(-3)
P 		4307
avr 3692.2
(2.4) 		3396.5
(1.9) 		4086.4
(3) 		340.5
(-3) 		3746

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2008
1 2 3 4 5 6 range
A 1765.7
(-2.4)
P 		3122.5
(2.8)
P 		3172.7
(3)
P 		2660.7
(1)
P 		2411.6
(0.1)
P 		1606.6
(-3)
P 		1566
B 3614.5
(3)
P 		3022
(-0.8)
P 		3011.9
(-0.9)
P 		3069.1
(-0.5)
P 		3469.4
(2.1)
P 		2682.5
(-3)
P 		932
C 2990.7
(3)
P 		2776.6
(1.8)
P 		2743.2
(1.7)
P 		1878.9
(-3)
P 		2609.2
(0.9)
P 		2345.6
(-0.5)
P 		1112
avr 2790.3
(1.5) 		2973.7
(3) 		2975.9
(3) 		2536.2
(-0.5) 		2830.1
(1.9) 		2211.6
(-3) 		764
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182989_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11352
Sequence Type Exemplar sequence
Representative Public ID Y22F5A.4 NCBI
Target Description Y22F5A.4 /REP_DB=WormBase Gene ID /WP=CE16605 /TR=O62415 /GB=CAA16323.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073241(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073241 NCBI Caenorhabditis elegans LYSozyme family member (lys-1) (lys-1) mRNA, complete cds. 11/11 None
SNAP00000026004 ENSEMBL cdna:SNAP chromosome:CEL140:V:10280489:10281579:1 11/11 None
GENEFINDER00000026011 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10276435:10281579:1 11/11 None
Y22F5A.4.2 ENSEMBL cdna:known chromosome:CEL140:V:10280408:10281617:1 gene:Y22F5A.4 11/11 None
Y22F5A.4.1 ENSEMBL cdna:known chromosome:CEL140:V:10280485:10281708:1 gene:Y22F5A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10280488-10281579(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lys-1
Ensembl Y22F5A.4
Entrez Gene 179428 Entrez gene
SwissProt O62415 EMBL-EBI
WormBase CE16605 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9253 peptidoglycan catabolism inferred from electronic annotation QuickGO AmiGO
16998 cell wall catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3796 lysozyme activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16323 Hypothetical protein Y22F5A.4 [Caenorhabditis elegans] ref|NP_505642.1| LYSozyme family member (lys-1) [Caenorhabditis elegans] 1.0E-164
blast CAE64779 Hypothetical protein CBG09572 [Caenorhabditis briggsae] 1.0E-133
Sequence
Target Sequence 
>C. ELEGANS:182989_AT
gatctggagcattcgacacaacttcagtcacttctatcagaaatgcttattctgctggat
tgggaattgaggtctacatgactccacaaccactttcttctcttcaaggataccaacaac
ttgatgctctttataacggacttaacggaaatggaatcaccatcagatctgtctggattc
aggttacctccccagccaactggcagaagtctgcaactactaatgtgaacttcctcaaca
gcattatttcacgagccaagcaatacggactgactgtcggaatctacaccaaccaatacg
actggagccaaattactggaaactgggcaactttgagctctgatgttcttctctggtatt
ggcatgttcttggaggtggtgttactggagagactccagctactttcgatgacttccgtg
cattcggatctttcaagaaggcttctgttaagcaatttgctcaagttgagtctgtctgct
ctttgaccgtcaatcgtgatgtttacgttgttggaatcccagctgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTGGAGCATTCGACACAACTTC 25 419 293 Antisense
ACACAACTTCAGTCACTTCTATCAG 396 111 308 Antisense
ACCACTTTCTTCTCTTCAAGGATAC 150 85 381 Antisense
CTTCCTCAACAGCATTATTTCACGA 578 219 522 Antisense
GAGCCAAGCAATACGGACTGACTGT 351 385 545 Antisense
GAATCTACACCAACCAATACGACTG 93 327 572 Antisense
GCAACTTTGAGCTCTGATGTTCTTC 389 319 619 Antisense
GTTCTTCTCTGGTATTGGCATGTTC 149 445 637 Antisense
GACTTCCGTGCATTCGGATCTTTCA 629 371 703 Antisense
AAGTTGAGTCTGTCTGCTCTTTGAC 700 155 755 Antisense
TACGTTGTTGGAATCCCAGCTGCTG 316 647 796 Antisense
Sequence Source Affymetrix Proprietary Database