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[182988_at]

Description C29G2.3 /REP_DB=WormBase Gene ID /WP=CE08464 /TR=O16886 /GB=AAB69892.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 20      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 53
(0.6)
A 		31.7
(-2)
A 		23.4
(-3)
A 		72.3
(3)
A 		49
B 39
(-0.3)
A 		9.8
(-3)
A 		35.2
(-0.6)
A 		73.9
(3)
P 		64
C 81.6
(1.5)
A 		97.7
(2.6)
A 		16.3
(-3)
A 		103.8
(3)
P 		88
avr 57.9
(0.4) 		46.4
(-0.8) 		25
(-3) 		83.3
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 195.3
(3)
P 		62.4
(-1.1)
A 		50.7
(-1.5)
A 		2.8
(-3)
A 		38.2
(-1.9)
A 		64.3
(-1.1)
A 		193
B 154.8
(3)
P 		18.9
(-3)
A 		43.7
(-1.9)
A 		28.8
(-2.6)
A 		22
(-2.9)
A 		50.3
(-1.6)
A 		136
C 150.9
(3)
P 		46.2
(-1.4)
A 		41.3
(-1.6)
A 		9
(-2.9)
A 		7.7
(-3)
A 		69.7
(-0.4)
A 		143
avr 167
(3) 		42.5
(-1.9) 		45.2
(-1.8) 		13.5
(-3) 		22.6
(-2.6) 		61.4
(-1.1) 		154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 19.3
(3)
A 		6.9
(-2.6)
A 		6.1
(-3)
A 		10.6
(-1)
A 		13
B 12.4
(1.5)
A 		2.4
(-3)
A 		8.2
(-0.4)
A 		15.8
(3)
P 		13
C 27
(2.7)
A 		28.1
(3)
A 		5.7
(-3)
A 		17.5
(0.2)
P 		22
avr 19.6
(3) 		12.5
(-0.3) 		6.7
(-3) 		14.6
(0.7) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 36
(3)
P 		22.2
(0.7)
A 		11.1
(-1.2)
A 		0.7
(-3)
A 		11.5
(-1.2)
A 		15.6
(-0.5)
A 		35
B 53.9
(3)
P 		6.3
(-3)
A 		10.6
(-2.5)
A 		7.6
(-2.8)
A 		9
(-2.7)
A 		18.8
(-1.4)
A 		48
C 55.9
(3)
P 		14.1
(-1.6)
A 		10.5
(-2)
A 		1.8
(-3)
A 		2.5
(-2.9)
A 		23.3
(-0.6)
A 		54
avr 48.6
(3) 		14.2
(-1.6) 		10.7
(-2) 		3.4
(-3) 		7.7
(-2.4) 		19.2
(-0.9) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182988_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15523
Sequence Type Exemplar sequence
Representative Public ID C29G2.3 NCBI
Target Description C29G2.3 /REP_DB=WormBase Gene ID /WP=CE08464 /TR=O16886 /GB=AAB69892.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071306(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071306 NCBI Caenorhabditis elegans C29G2.3 (C29G2.3) mRNA, complete cds. 11/11 None
GENEFINDER00000002209 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2580736:2582701:1 11/11 None
C29G2.3 ENSEMBL cdna:known chromosome:CEL140:V:2580700:2582701:1 gene:C29G2.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002206 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2580699-2582701(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29G2.3
Entrez Gene 183032 Entrez gene
SwissProt O16886 EMBL-EBI
WormBase CE08464 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69892 Hypothetical protein C29G2.3 [Caenorhabditis elegans] ref|NP_503707.1| C29G2.3 [Caenorhabditis elegans] 1.0E-115
blast AAB69892 Hypothetical protein C29G2.3 [Caenorhabditis elegans] ref|NP_503707.1| C29G2.3 [Caenorhabditis elegans] 1.0E-109
blast CAE62516 Hypothetical protein CBG06621 [Caenorhabditis briggsae] 2.0E-64
Sequence
Target Sequence 
>C. ELEGANS:182988_AT
atttcaggttcatcatctgccacttcggagtttggtatttcattttttgcaccacttgcc
tatacgtaccctccaaatgaagctgacctgtttcccgggcaatctttaactgttgagcaa
gcaagtcaaaaggtgaaaacggacttggacttggctatatcaaaagctctaactgtcaac
cagctttacctctcaacacctccaaccgtcaactttacatttgtcccccaaaaagtgcaa
attgccgacggagaagtgtgttttaccgacggaacaagtatcgcaatttctggaacaatt
gtctataaatgttcaattggaggtggaagtacggtagcgccggtttctggagccacgaca
cagaccttagctccaaccactgtggcaaccactactaaatccgaggaagacattcgcttt
aaacgtgctctaccgcgagaacgtgccgctgctggggtcagtgctcagccgtttgttcaa
tcaatgaccgtaactgcaactgcaagtcagccactttttgagaatcaatggaaacaaatc
gggcggtccgttcaatctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCAGGTTCATCATCTGCCACTT 157 17 133 Antisense
TTTTGCACCACTTGCCTATACGTAC 141 675 177 Antisense
GTACCCTCCAAATGAAGCTGACCTG 35 459 198 Antisense
CTGTTTCCCGGGCAATCTTTAACTG 681 237 220 Antisense
TAACTGTCAACCAGCTTTACCTCTC 316 639 302 Antisense
CCTCCAACCGTCAACTTTACATTTG 488 259 331 Antisense
GGTTTCTGGAGCCACGACACAGACC 685 505 474 Antisense
TAGCTCCAACCACTGTGGCAACCAC 369 651 500 Antisense
GACATTCGCTTTAAACGTGCTCTAC 395 371 541 Antisense
GCAACTGCAAGTCAGCCACTTTTTG 51 319 628 Antisense
CAAATCGGGCGGTCCGTTCAATCTG 379 191 667 Antisense
Sequence Source Affymetrix Proprietary Database