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[182987_at]

Description W03B1.2 /REP_DB=WormBase Gene ID /WP=CE14490 /TR=Q23141 /GB=AAC24437.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 17      4grp_high_8_8 > 48      6grp_total > 07      4grp_total > 63      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 91.8
(3)
P 		72.7
(0.4)
P 		64.5
(-0.8)
P 		48.5
(-3)
A 		43
B 110.6
(3)
P 		103.7
(2.3)
M 		77
(-0.6)
P 		55
(-3)
P 		56
C 73.8
(1.5)
P 		20.8
(-3)
A 		91.4
(3)
P 		85.5
(2.5)
P 		71
avr 92.1
(3) 		65.7
(-2.4) 		77.6
(0) 		63
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 121.6
(3)
P 		76.1
(-1.6)
P 		81.8
(-1)
P 		80.1
(-1.2)
P 		103.3
(1.2)
P 		61.9
(-3)
M 		60
B 112.2
(3)
P 		64.4
(-1.7)
P 		77
(-0.4)
P 		50.9
(-3)
P 		58.8
(-2.2)
P 		75.3
(-0.6)
P 		61
C 82.7
(1.7)
P 		93.3
(3)
P 		88
(2.4)
P 		60.3
(-1)
A 		44.2
(-3)
M 		62.3
(-0.8)
P 		49
avr 105.5
(3) 		77.9
(-1) 		82.3
(-0.3) 		63.8
(-3) 		68.8
(-2.3) 		66.5
(-2.6) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 33.4
(3)
P 		15.8
(-1)
P 		16.9
(-0.8)
P 		7.1
(-3)
A 		26
B 35.3
(3)
P 		25.6
(0.5)
M 		17.9
(-1.4)
P 		11.7
(-3)
P 		24
C 24.4
(1.3)
P 		6
(-3)
A 		31.9
(3)
P 		14.4
(-1.1)
P 		26
avr 31
(3) 		15.8
(-1.6) 		22.2
(0.3) 		11.1
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 22.4
(-0.3)
P 		27.1
(1.5)
P 		17.8
(-2)
P 		20.3
(-1.1)
P 		31.2
(3)
P 		15.1
(-3)
M 		16
B 39
(3)
P 		21.4
(-1.1)
P 		18.7
(-1.8)
P 		13.5
(-3)
P 		23.9
(-0.6)
P 		28.1
(0.4)
P 		26
C 30.7
(3)
P 		28.5
(2.3)
P 		22.4
(0.3)
P 		12.1
(-3)
A 		14.3
(-2.3)
M 		20.8
(-0.2)
P 		19
avr 30.7
(3) 		25.7
(1.1) 		19.6
(-1.3) 		15.3
(-3) 		23.1
(0) 		21.3
(-0.7) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182987_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11025
Sequence Type Exemplar sequence
Representative Public ID W03B1.2 NCBI
Target Description W03B1.2 /REP_DB=WormBase Gene ID /WP=CE14490 /TR=Q23141 /GB=AAC24437.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068140(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068140 NCBI Caenorhabditis elegans W03B1.2 (W03B1.2) mRNA, complete cds. 11/11 None
SNAP00000035754 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4326709:4331886:1 11/11 None
GENEFINDER00000035771 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4326814:4331886:1 11/11 None
W03B1.2 ENSEMBL cdna:known chromosome:CEL140:IV:4326709:4332011:1 gene:W03B1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4326714-4331892(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03B1.2
Entrez Gene 177198 Entrez gene
SwissProt Q23141 EMBL-EBI
WormBase CE34601 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24437 Hypothetical protein W03B1.2 [Caenorhabditis elegans] ref|NP_500541.2| W03B1.2 [Caenorhabditis elegans] 0.0
blast AAF60501 Hypothetical protein Y38C1AB.6 [Caenorhabditis elegans] gb|AAF60498.1| Hypothetical protein Y38C1AB.2 [Caenorhabditis elegans] ref|NP_499852.1| Y38C1AB.6 [Caenorhabditis elegans] ref|NP_499855.1| Y38C1AB.2 [Caenorhabditis elegans] 1.0E-158
blast AAF60501 Hypothetical protein Y38C1AB.6 [Caenorhabditis elegans] gb|AAF60498.1| Hypothetical protein Y38C1AB.2 [Caenorhabditis elegans] ref|NP_499852.1| Y38C1AB.6 [Caenorhabditis elegans] ref|NP_499855.1| Y38C1AB.2 [Caenorhabditis elegans] 1.0E-154
blast AAF60501 Hypothetical protein Y38C1AB.6 [Caenorhabditis elegans] gb|AAF60498.1| Hypothetical protein Y38C1AB.2 [Caenorhabditis elegans] ref|NP_499852.1| Y38C1AB.6 [Caenorhabditis elegans] ref|NP_499855.1| Y38C1AB.2 [Caenorhabditis elegans] 1.0E-152
blast CAE58492 Hypothetical protein CBG01637 [Caenorhabditis briggsae] 1.0E-148
blast CAE58492 Hypothetical protein CBG01637 [Caenorhabditis briggsae] 1.0E-147
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500541.2 7 289-311,324-342,401-423,436-458,483-505,573-595,636-658
W03B1.2 7 289-311,324-342,401-423,436-458,483-505,573-595,636-658
SNAP00000035754 7 289-311,324-342,352-374,391-413,438-460,528-550,591-613
GENEFINDER00000035771 6 260-282,297-316,371-393,408-430,458-480,542-564
Sequence
Target Sequence 
>C. ELEGANS:182987_AT
gcctttctcgctgttttatgtggtgctacgtttttggtattcttgctttttcaagtatat
tgtgatttttaccacttggctcacctcgggatgctgcaaatgctcatctacagcaatttc
cagcctatactggagaaatatagtgagaatcgtcgaggggtacccgtggggagcggtcag
gcaaaccgataacgagattgacacgaaagtcgcggagtttttaaggaaacgaccggataa
tgcgttggaaaagctgaaggatctagtgaataactatgataaagatgtggatgatgagga
ggcactaaagaagctggggaaagagatcaagaagtttttggcaaaggaaatcggagagga
acgggagagggctcagtcgaatttggaaaatcatccaagatcgggatcagtattagatcc
gaaaaaaaagcatagactatcaagaacttttgcgtttgttccggttggaagcagtgctgt
ttcacttgatcaggaaggttcaactgcgccatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTTTCTCGCTGTTTTATGTGGTG 290 281 1923 Antisense
TGTGGTGCTACGTTTTTGGTATTCT 358 555 1941 Antisense
GTGATTTTTACCACTTGGCTCACCT 116 453 1984 Antisense
CTCACCTCGGGATGCTGCAAATGCT 283 229 2002 Antisense
CTCATCTACAGCAATTTCCAGCCTA 197 229 2025 Antisense
GAGAATCGTCGAGGGGTACCCGTGG 542 389 2067 Antisense
TACCCGTGGGGAGCGGTCAGGCAAA 202 637 2083 Antisense
GGGAGAGGGCTCAGTCGAATTTGGA 639 491 2285 Antisense
TTTGCGTTTGTTCCGGTTGGAAGCA 655 665 2371 Antisense
GAAGCAGTGCTGTTTCACTTGATCA 687 341 2390 Antisense
TCAGGAAGGTTCAACTGCGCCATCA 408 623 2412 Antisense
Sequence Source Affymetrix Proprietary Database