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[182986_at] 7TM chemoreceptor, srab family

Description ZK697.7 /REP_DB=WormBase Gene ID /WP=CE15407 /TR=O61200 /GB=AAC48243.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 12      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 2.7
(-3)
A 		28.3
(0.5)
A 		5.1
(-2.7)
A 		46.2
(3)
A 		44
B 40.8
(3)
A 		4.6
(-3)
A 		5.9
(-2.8)
A 		27
(0.7)
A 		36
C 37.5
(-1.4)
A 		7.7
(-2.8)
A 		4.4
(-3)
A 		128
(3)
A 		124
avr 27
(-0.9) 		13.5
(-2.2) 		5.1
(-3) 		67.1
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 45.7
(3)
A 		2.1
(-3)
A 		17.6
(-0.8)
A 		7.3
(-2.3)
A 		4.6
(-2.6)
A 		1.9
(-3)
A 		44
B 29.2
(2.9)
A 		29.6
(3)
A 		17
(-0)
A 		4.6
(-3)
A 		13.1
(-1)
A 		12.6
(-1.1)
A 		25
C 18.2
(-1.4)
A 		16.7
(-1.6)
A 		55.9
(3)
A 		26
(-0.5)
A 		10.9
(-2.3)
A 		4.8
(-3)
A 		51
avr 31
(3) 		16.1
(-0.6) 		30.2
(2.8) 		12.6
(-1.5) 		9.5
(-2.2) 		6.4
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 1
(-3)
A 		6.1
(2.3)
A 		1.3
(-2.7)
A 		6.8
(3)
A 		6
B 13
(3)
A 		1.1
(-3)
A 		1.4
(-2.8)
A 		5.8
(-0.6)
A 		12
C 12.4
(0.3)
A 		2.2
(-2.8)
A 		1.5
(-3)
A 		21.6
(3)
A 		20
avr 8.8
(1.4) 		3.1
(-2) 		1.4
(-3) 		11.4
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 8.4
(3)
A 		0.7
(-2.8)
A 		3.8
(-0.5)
A 		1.9
(-1.9)
A 		1.4
(-2.3)
A 		0.5
(-3)
A 		8
B 10.2
(3)
A 		9.9
(2.8)
A 		4.1
(-1.1)
A 		1.2
(-3)
A 		5.3
(-0.3)
A 		4.7
(-0.7)
A 		9
C 6.7
(-0.6)
A 		5.1
(-1.3)
A 		14.2
(3)
A 		5.2
(-1.3)
A 		3.5
(-2.1)
A 		1.6
(-3)
A 		13
avr 8.4
(3) 		5.2
(-0.1) 		7.4
(2) 		2.8
(-2.5) 		3.4
(-1.9) 		2.3
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182986_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15340
Sequence Type Exemplar sequence
Representative Public ID ZK697.7 NCBI
Target Description ZK697.7 /REP_DB=WormBase Gene ID /WP=CE15407 /TR=O61200 /GB=AAC48243.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071093(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071093 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-25) (srab-25) mRNA, complete cds. 11/11 None
GENEFINDER00000036777 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1739162:1740986:-1 11/11 None
ZK697.7 ENSEMBL cdna:known chromosome:CEL140:V:1738756:1740986:-1 gene:ZK697.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1738755-1740986(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srab family
Gene Symbol srab-25
Ensembl ZK697.7
Entrez Gene 191413 Entrez gene
SwissProt O61200 EMBL-EBI
WormBase CE15407 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48243 Serpentine receptor, class ab (class a-like) protein 25 [Caenorhabditis elegans] ref|NP_503494.1| Serpentine Receptor, class AB (class A-like) family member (srab-25) [Caenorhabditis elegans] 0.0
blast AAC48243 Serpentine receptor, class ab (class a-like) protein 25 [Caenorhabditis elegans] ref|NP_503494.1| Serpentine Receptor, class AB (class A-like) family member (srab-25) [Caenorhabditis elegans] 1.0E-173
blast CAE74179 Hypothetical protein CBG21852 [Caenorhabditis briggsae] 4.0E-92
blast CAE74179 Hypothetical protein CBG21852 [Caenorhabditis briggsae] 3.0E-84
blast CAE74134 Hypothetical protein CBG21805 [Caenorhabditis briggsae] 1.0E-61
blast NP_503325 Serpentine Receptor, class AB (class A-like) family member (srab-16) [Caenorhabditis elegans] gb|AAB69946.2| Serpentine receptor, class ab (class a-like) protein 16 [Caenorhabditis elegans] 3.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503494.1 7 27-49,56-78,109-131,144-166,186-205,238-260,275-297
ZK697.7 7 27-49,56-78,109-131,144-166,186-205,238-260,275-297
GENEFINDER00000036777 9 27-49,56-78,109-131,144-166,186-205,238-260,275-294,301-318,322-344
Sequence
Target Sequence 
>C. ELEGANS:182986_AT
taataactgttcccctatttcttgattcaaagttcacaactcggccggatttttgtgaat
ttcatgatccttccgactggcttttggttgtagagatctttacgattttctccaattttg
tagcctttttgcaatgttggaaattatacagagtgaacacgaaactcagagtccattcaa
aagtgcgccggttaagccaaaaatatcaaatcgaggagaacaaaatgttgataaaagtta
tattgcgtttcacttgcttagattttgtgttcatgatggtatattgttttggaaacttgg
ccacaaattttattgactttagtttatcccaagggaaattgcacggattcatagaaatgg
tgcattgtctgccggtttatgcaattgtcgtcacatattccatggcaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATAACTGTTCCCCTATTTCTTGA 622 635 488 Antisense
GTTCACAACTCGGCCGGATTTTTGT 562 445 519 Antisense
TGTGAATTTCATGATCCTTCCGACT 19 557 541 Antisense
TCCTTCCGACTGGCTTTTGGTTGTA 586 591 555 Antisense
GATCTTTACGATTTTCTCCAATTTT 331 419 582 Antisense
TCTCCAATTTTGTAGCCTTTTTGCA 502 607 596 Antisense
AGAGTCCATTCAAAAGTGCGCCGGT 443 67 655 Antisense
ATATTGCGTTTCACTTGCTTAGATT 158 19 727 Antisense
GAAATGGTGCATTGTCTGCCGGTTT 531 361 841 Antisense
GCCGGTTTATGCAATTGTCGTCACA 18 285 858 Antisense
TGTCGTCACATATTCCATGGCAAGA 110 559 873 Antisense
Sequence Source Affymetrix Proprietary Database