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[182985_at]

Description K07D4.4 /REP_DB=WormBase Gene ID /WP=CE19528 /TR=O76575 /GB=AAC26288.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 0      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_total > 09      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 237.9
(0.1)
P 		207.1
(-1.2)
P 		163.8
(-3)
P 		309.5
(3)
P 		146
B 242.2
(2.6)
P 		224.5
(1.7)
P 		133.7
(-3)
P 		249.3
(3)
P 		116
C 253.6
(2.1)
P 		200.4
(-0.2)
P 		137
(-3)
P 		273.6
(3)
P 		137
avr 244.6
(1.5) 		210.7
(-0) 		144.8
(-3) 		277.5
(3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 277.4
(3)
P 		142.4
(-3)
P 		149.6
(-2.7)
P 		155.1
(-2.4)
P 		203.9
(-0.3)
P 		165.9
(-2)
P 		135
B 223.6
(3)
P 		170.3
(-0.6)
P 		164
(-1.1)
P 		188.3
(0.6)
P 		149.6
(-2.1)
P 		135.8
(-3)
P 		88
C 160.4
(-2)
P 		180.8
(-1)
P 		140.6
(-3)
A 		261.4
(3)
P 		141.9
(-2.9)
P 		141.3
(-3)
P 		121
avr 220.5
(3) 		164.5
(-1.6) 		151.4
(-2.7) 		201.6
(1.4) 		165.1
(-1.6) 		147.7
(-3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 86.6
(3)
P 		45
(-2.7)
P 		42.8
(-3)
P 		45.3
(-2.7)
P 		44
B 77.2
(3)
P 		55.4
(0.2)
P 		31
(-3)
P 		53.1
(-0.1)
P 		46
C 83.9
(3)
P 		57.6
(-1.2)
P 		47.7
(-2.7)
P 		46.1
(-3)
P 		38
avr 82.6
(3) 		52.7
(-1.3) 		40.5
(-3) 		48.2
(-1.9) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 51.1
(0.8)
P 		50.7
(0.8)
P 		32.6
(-3)
P 		39.3
(-1.6)
P 		61.5
(3)
P 		40.4
(-1.4)
P 		29
B 77.8
(3)
P 		56.7
(-0.3)
P 		39.8
(-3)
P 		49.9
(-1.4)
P 		60.8
(0.3)
P 		50.6
(-1.3)
P 		38
C 59.4
(3)
P 		55.2
(1.9)
P 		35.8
(-3)
A 		52.6
(1.3)
P 		45.9
(-0.4)
P 		47.3
(-0.1)
P 		24
avr 62.8
(3) 		54.2
(1.1) 		36.1
(-3) 		47.3
(-0.5) 		56.1
(1.5) 		46.1
(-0.8) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182985_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5978
Sequence Type Exemplar sequence
Representative Public ID K07D4.4 NCBI
Target Description K07D4.4 /REP_DB=WormBase Gene ID /WP=CE19528 /TR=O76575 /GB=AAC26288.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062309(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062309 NCBI Caenorhabditis elegans K07D4.4 (K07D4.4) mRNA, complete cds. 11/11 None
SNAP00000021599 ENSEMBL cdna:SNAP chromosome:CEL140:II:4031375:4032379:-1 9/11 None
GENEFINDER00000021609 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4031375:4032379:-1 9/11 None
K07D4.4 ENSEMBL cdna:known chromosome:CEL140:II:4031375:4032642:-1 gene:K07D4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4031373-4032641(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07D4.4
Entrez Gene 187108 Entrez gene
SwissProt O76575 EMBL-EBI
WormBase CE19528 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26288 Hypothetical protein K07D4.4 [Caenorhabditis elegans] ref|NP_494710.1| K07D4.4 [Caenorhabditis elegans] 1.0E-107
blast AAC26288 Hypothetical protein K07D4.4 [Caenorhabditis elegans] ref|NP_494710.1| K07D4.4 [Caenorhabditis elegans] 4.0E-32
blast CAE56298 Hypothetical protein CBG23953 [Caenorhabditis briggsae] 3.0E-30
blast CAE56298 Hypothetical protein CBG23953 [Caenorhabditis briggsae] 7.0E-18
Sequence
Target Sequence 
>C. ELEGANS:182985_AT
gcaaagtttctgcccatttatcatattattcttcacatttgcggtattatgtgtcaaaag
tcaagatgaagtgttcattatggaccatccaacgtcacccgatgagcagcaaggaggcta
ccgtactccagaaaaatttggatttagaaaatttttgataatttttgaaaatctggaaat
tcaagttaggaacttaaaagtaattgcattaaaaattctagaaaattcggaaaaaaaacc
attattttgggttttggcacgagttttttatgactaccatacctctgaaaattttgcact
cttctcgtcccacatcgtagctctccgacctgattacacattctggaagatggtaaacgt
gctcaaaaccgtcttcgactcaaggcaaaccgagaagcgacggggtccaacacgtcgaga
aatcgaagaagttccggctccaaaactcccgaatttacgctccagaagact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAAGTTTCTGCCCATTTATCATA 140 319 111 Antisense
ATCATATTATTCTTCACATTTGCGG 233 31 130 Antisense
CATTATGGACCATCCAACGTCACCC 236 215 186 Antisense
GTCACCCGATGAGCAGCAAGGAGGC 338 461 204 Antisense
GCAAGGAGGCTACCGTACTCCAGAA 351 319 219 Antisense
TGAAAATTTTGCACTCTTCTCGTCC 518 573 396 Antisense
TCTCCGACCTGATTACACATTCTGG 80 611 432 Antisense
AACGTGCTCAAAACCGTCTTCGACT 192 145 466 Antisense
CCGTCTTCGACTCAAGGCAAACCGA 366 1 479 Antisense
CGGGGTCCAACACGTCGAGAAATCG 454 243 511 Antisense
TCCCGAATTTACGCTCCAGAAGACT 232 595 557 Antisense
Sequence Source Affymetrix Proprietary Database