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[182984_at]

Description F07C3.2 /REP_DB=WormBase Gene ID /WP=CE07024 /TR=Q19147 /GB=AAG24026.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 22      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 61      6grp_total > 22      4grp_total > 44      6grp_highest_sub > 01_02_03      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 319
1 2 3 4 range
A 392.5
(3)
P 		369.5
(2.4)
P 		244.7
(-0.8)
P 		159.1
(-3)
P 		233
B 406.1
(1.9)
P 		464
(3)
P 		294.9
(-0.2)
P 		145.5
(-3)
P 		319
C 422
(3)
P 		353.6
(1)
P 		254.2
(-2)
P 		219.1
(-3)
P 		203
avr 406.9
(3) 		395.7
(2.7) 		264.6
(-0.7) 		174.6
(-3) 		232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 412
1 2 3 4 5 6 range
A 385.8
(1.9)
P 		373.6
(1.6)
P 		447.5
(3)
P 		309.8
(0.5)
P 		149.1
(-2.5)
P 		121.6
(-3)
P 		326
B 397.6
(1)
P 		521.3
(2.8)
P 		531.6
(3)
P 		250.5
(-1.2)
P 		296.5
(-0.5)
P 		127.8
(-3)
P 		404
C 529.5
(2.9)
P 		533.4
(3)
P 		397.4
(0.9)
P 		276.2
(-0.9)
P 		240.3
(-1.5)
P 		140.8
(-3)
P 		393
avr 437.6
(2.3) 		476.1
(3) 		458.8
(2.7) 		278.8
(-0.4) 		228.6
(-1.3) 		130.1
(-3) 		346
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 142.9
(3)
P 		80.2
(-0.1)
P 		64
(-1)
P 		23.3
(-3)
P 		120
B 129.5
(3)
P 		114.6
(2.1)
P 		68.3
(-0.7)
P 		31
(-3)
P 		99
C 139.7
(3)
P 		101.7
(0.8)
P 		88.6
(0)
P 		36.9
(-3)
P 		103
avr 137.4
(3) 		98.8
(0.8) 		73.6
(-0.6) 		30.4
(-3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 71.1
(-0.6)
P 		132.9
(3)
P 		97.5
(0.9)
P 		78.6
(-0.2)
P 		45
(-2.1)
P 		29.6
(-3)
P 		103
B 138.4
(1.3)
P 		173.5
(3)
P 		129.1
(0.9)
P 		66.4
(-2.1)
P 		120.4
(0.5)
P 		47.7
(-3)
P 		126
C 196.2
(3)
P 		162.8
(1.7)
P 		101.1
(-0.8)
P 		55.5
(-2.7)
P 		77.8
(-1.8)
P 		47.1
(-3)
P 		149
avr 135.2
(1.9) 		156.4
(3) 		109.2
(0.5) 		66.8
(-1.7) 		81.1
(-0.9) 		41.5
(-3) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182984_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11710
Sequence Type Exemplar sequence
Representative Public ID F07C3.2 NCBI
Target Description F07C3.2 /REP_DB=WormBase Gene ID /WP=CE07024 /TR=Q19147 /GB=AAG24026.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072989(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072989 NCBI Caenorhabditis elegans F07C3.2 (F07C3.2) mRNA, complete cds. 11/11 None
F07C3.2 ENSEMBL cdna:known chromosome:CEL140:V:9227810:9229539:1 gene:F07C3.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009702 7/11 Cross Hyb Matching Probes None
GENEFINDER00000009734 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9227809-9229539(+) 96.31 100.0
Public Domain and Genome References
Gene Title
Ensembl F07C3.2
Entrez Gene 184123 Entrez gene
SwissProt Q19147 EMBL-EBI
WormBase CE07024 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_505390 F07C3.2 [Caenorhabditis elegans] gb|AAG24026.1| Hypothetical protein F07C3.2 [Caenorhabditis elegans] 1.0E-114
blast CAE72135 Hypothetical protein CBG19233 [Caenorhabditis briggsae] 1.0E-42
Sequence
Target Sequence 
>C. ELEGANS:182984_AT
gatgtaaatatttcactgcctgagaataaaatttatttcaaggcaataatcgttaaggat
cagtacgtttgtactaaagaaaattccacctgtgctaaaaatttgaaacgtttgtatgtc
aaaatctacactaaatattactttatccgatacatttttcagatcaaggtttctgtcttc
aaagtgcaacaatattacatgaaatcttgtattttttcagagacatatgccgaaaccaac
tgtaccataaaaggcgagatatcatgttattcgtgtatgggacgtgatatggagaattgc
caatcagggctcacatgttgcaagggagcttgcttcaaacttgaggatattaagcataac
gttatcgtgaaaggatgtgtgaataacagagaagaggatgcatcgatgaaggtgcgtgag
ctcaatgtgccactttattgggccaacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTAAATATTTCACTGCCTGAGA 264 409 118 Antisense
GAAAATTCCACCTGTGCTAAAAATT 670 351 196 Antisense
TCAAGGTTTCTGTCTTCAAAGTGCA 284 631 281 Antisense
GTATTTTTTCAGAGACATATGCCGA 449 451 326 Antisense
CATATGCCGAAACCAACTGTACCAT 133 213 341 Antisense
GCGAGATATCATGTTATTCGTGTAT 178 291 371 Antisense
GGAGAATTGCCAATCAGGGCTCACA 583 519 408 Antisense
GCCAATCAGGGCTCACATGTTGCAA 16 279 416 Antisense
GAGGATGCATCGATGAAGGTGCGTG 708 403 511 Antisense
AGGTGCGTGAGCTCAATGTGCCACT 296 57 527 Antisense
TGTGCCACTTTATTGGGCCAACAAG 93 545 543 Antisense
Sequence Source Affymetrix Proprietary Database