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[182982_at]

Description F13G3.10 /REP_DB=WormBase Gene ID /WP=CE17660 /TR=P90836 /GB=CAA95825.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 54      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 78      6grp_total > 55      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1372
1 2 3 4 range
A 1104.1
(-3)
P 		2021.9
(2.5)
P 		2105.6
(3)
P 		1179.3
(-2.5)
P 		1002
B 1054.4
(-3)
P 		1483.7
(-1.1)
P 		1862.7
(0.6)
P 		2418.9
(3)
P 		1365
C 1047.3
(-3)
P 		1401.2
(-0.8)
P 		2016.5
(3)
P 		1947.2
(2.6)
P 		969
avr 1068.6
(-3) 		1635.6
(0.7) 		1994.9
(3) 		1848.5
(2.1) 		926

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1288
1 2 3 4 5 6 range
A 927.4
(-2.4)
P 		1610.4
(0.8)
P 		2079.9
(3)
P 		1745.3
(1.4)
P 		798.2
(-3)
P 		2086.5
(3)
P 		1288
B 1101.8
(-3)
P 		2065.1
(3)
P 		2000.4
(2.6)
P 		1158.5
(-2.6)
P 		1522.3
(-0.4)
P 		2015.3
(2.7)
P 		963
C 1386
(0.7)
P 		1640.9
(2.5)
P 		1313.6
(0.2)
P 		858.5
(-3)
P 		1446
(1.1)
P 		1718.7
(3)
P 		860
avr 1138.4
(-3) 		1772.1
(1.7) 		1798
(1.9) 		1254.1
(-2.1) 		1255.5
(-2.1) 		1940.2
(3) 		802
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 530
1 2 3 4 range
A 402
(0.6)
P 		438.9
(1.2)
P 		550.4
(3)
P 		172.6
(-3)
P 		378
B 336.2
(-3)
P 		366.4
(-2)
P 		431.6
(0.2)
P 		515.5
(3)
P 		179
C 346.7
(-2.7)
P 		402.9
(-1.8)
P 		702.8
(3)
P 		328.3
(-3)
P 		375
avr 361.6
(-2.4) 		402.7
(-1.3) 		561.6
(3) 		338.8
(-3) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 581
1 2 3 4 5 6 range
A 171
(-3)
P 		572.7
(3)
P 		453
(1.2)
P 		442.7
(1.1)
P 		240.9
(-2)
P 		508
(2)
P 		402
B 383.4
(-2)
P 		687.4
(2.1)
P 		485.8
(-0.6)
P 		306.8
(-3)
P 		618.5
(1.2)
P 		751.5
(3)
P 		445
C 513.7
(2.1)
P 		500.7
(1.9)
P 		334.3
(-0.6)
P 		172.6
(-3)
P 		467.9
(1.4)
P 		575.4
(3)
P 		403
avr 356
(-2) 		586.9
(2.5) 		424.4
(-0.7) 		307.4
(-3) 		442.4
(-0.3) 		611.6
(3) 		304
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182982_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.362
Sequence Type Exemplar sequence
Representative Public ID F13G3.10 NCBI
Target Description F13G3.10 /REP_DB=WormBase Gene ID /WP=CE17660 /TR=P90836 /GB=CAA95825.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059669(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059669 NCBI Caenorhabditis elegans F13G3.10 (F13G3.10) mRNA, complete cds. 11/11 None
F13G3.10 ENSEMBL cdna:known chromosome:CEL140:I:7321715:7322409:-1 gene:F13G3.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013988 8/11 Cross Hyb Matching Probes None
GENEFINDER00000013996 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7321735-7322335(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13G3.10
Entrez Gene 3565846 Entrez gene
SwissProt P90836 EMBL-EBI
WormBase CE17660 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95797 Hypothetical protein F13G3.10 [Caenorhabditis elegans] emb|CAA95825.1| Hypothetical protein F13G3.10 [Caenorhabditis elegans] ref|NP_492070.1| F13G3.10 [Caenorhabditis elegans] 3.0E-48
blast CAE66587 Hypothetical protein CBG11908 [Caenorhabditis briggsae] 4.0E-41
Sequence
Target Sequence 
>C. ELEGANS:182982_AT
gtggacaaacacaactggggaagcgaagaactttctaaagtatccgacactagagaagag
aaagatgatttgaagctcaatactgacgctcttggaaacttgttcaatgcttctgctccc
gcacggcccaagattaatatcaagaaagaggatctgcaactgattatgaatgaattagag
cttcaagaaggaacagttcgtgccaaacttatcgaaacaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGACAAACACAACTGGGGAAGCG 163 491 40 Antisense
CAACTGGGGAAGCGAAGAACTTTCT 578 67 51 Antisense
AACTTTCTAAAGTATCCGACACTAG 232 139 68 Antisense
GAAGCTCAATACTGACGCTCTTGGA 83 343 111 Antisense
ATACTGACGCTCTTGGAAACTTGTT 118 19 119 Antisense
GAAACTTGTTCAATGCTTCTGCTCC 362 357 134 Antisense
TCCCGCACGGCCCAAGATTAATATC 523 593 156 Antisense
GAGGATCTGCAACTGATTATGAATG 157 403 187 Antisense
GAGCTTCAAGAAGGAACAGTTCGTG 49 387 217 Antisense
GGAACAGTTCGTGCCAAACTTATCG 474 529 229 Antisense
CGTGCCAAACTTATCGAAACAAATG 20 245 238 Antisense
Sequence Source Affymetrix Proprietary Database