[Home] | [Total List]

[182981_at]

Description ZC308.3 /REP_DB=WormBase Gene ID /WP=CE15163 /TR=O17086 /GB=AAB70343.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 15      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 7.9
(2.8)
A 		6.7
(0.2)
A 		5.2
(-3)
A 		8
(3)
A 		3
B 4.7
(-2.9)
A 		4.6
(-3)
A 		5.2
(-2.4)
A 		10.2
(3)
A 		6
C 11.3
(3)
A 		5.6
(-3)
A 		7.2
(-1.3)
A 		6.4
(-2.2)
A 		6
avr 8
(2.5) 		5.6
(-3) 		5.9
(-2.3) 		8.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 16.8
(3)
A 		2.7
(-3)
A 		4.8
(-2.1)
A 		7.7
(-0.9)
A 		6.6
(-1.3)
A 		8.7
(-0.4)
A 		14
B 8.1
(1.1)
A 		4.4
(-1.8)
A 		9.7
(2.4)
A 		10.5
(3)
A 		5.3
(-1.1)
A 		2.9
(-3)
A 		8
C 3.7
(-1.8)
A 		5.8
(0.4)
A 		2.6
(-3)
A 		8.2
(3)
A 		3
(-2.6)
A 		4.1
(-1.4)
A 		6
avr 9.5
(3) 		4.3
(-3) 		5.7
(-1.4) 		8.8
(2.2) 		5
(-2.2) 		5.2
(-2) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.9
(3)
A 		1.4
(-2.3)
A 		1.4
(-2.3)
A 		1.2
(-3)
A 		2
B 1.5
(-0.8)
A 		1.1
(-3)
A 		1.2
(-2.5)
A 		2.2
(3)
A 		1
C 3.7
(3)
A 		1.6
(-1.8)
A 		2.5
(0.2)
A 		1.1
(-3)
A 		3
avr 2.7
(3) 		1.4
(-3) 		1.7
(-1.6) 		1.5
(-2.5) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 3.1
(3)
A 		1
(-3)
A 		1
(-3)
A 		2
(-0.1)
A 		2
(-0.1)
A 		2.1
(0.1)
A 		2
B 2.8
(3)
A 		1.5
(-1.6)
A 		2.4
(1.6)
A 		2.8
(3)
A 		2.2
(0.9)
A 		1.1
(-3)
A 		2
C 1.4
(0.8)
A 		1.8
(3)
A 		0.7
(-3)
A 		1.6
(1.9)
A 		1
(-1.4)
A 		1.4
(0.8)
A 		1
avr 2.4
(3) 		1.4
(-3) 		1.4
(-3) 		2.1
(1.2) 		1.7
(-1.2) 		1.5
(-2.4) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182981_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.413
Sequence Type Exemplar sequence
Representative Public ID ZC308.3 NCBI
Target Description ZC308.3 /REP_DB=WormBase Gene ID /WP=CE15163 /TR=O17086 /GB=AAB70343.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059441(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059441 NCBI Caenorhabditis elegans defective in Germ Line Development family member (gld-2) (gld-2) mRNA, complete cds. 11/11 A 
GENEFINDER00000042593 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6376441:6379862:1 11/11 None
SNAP00000042586 ENSEMBL cdna:SNAP chromosome:CEL140:I:6378164:6379862:1 11/11 None
ZC308.1a ENSEMBL cdna:known chromosome:CEL140:I:6378100:6394278:1 gene:ZC308.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172338 4 1 NM_059440 182181_at (11)
NM_059441 172979_at (11), 174893_at (11), 182981_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6378092-6379791(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZC308.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70342 Defective in germ line development protein 2, isoform a [Caenorhabditis elegans] ref|NP_491842.2| defective in Germ Line Development family member (gld-2) [Caenorhabditis elegans] gb|AAM94369.1| regulatory cytoplasmic polyA polymerase [Caenorhabditis elegans] 0.0
blast AAO21479 Defective in germ line development protein 2, isoform d [Caenorhabditis elegans] ref|NP_001021845.1| defective in Germ Line Development family member (gld-2) [Caenorhabditis elegans] 0.0
blast AAO21478 Defective in germ line development protein 2, isoform c [Caenorhabditis elegans] ref|NP_491841.2| defective in Germ Line Development family member (gld-2) [Caenorhabditis elegans] 0.0
blast AAB70344 Hypothetical protein ZC308.4 [Caenorhabditis elegans] ref|NP_491839.1| ZC308.4 [Caenorhabditis elegans] 1.0E-160
blast T32273 hypothetical protein ZC308.3 - Caenorhabditis elegans 1.0E-157
blast T32273 hypothetical protein ZC308.3 - Caenorhabditis elegans 1.0E-156
blast AAB70342 Defective in germ line development protein 2, isoform a [Caenorhabditis elegans] ref|NP_491842.2| defective in Germ Line Development family member (gld-2) [Caenorhabditis elegans] gb|AAM94369.1| regulatory cytoplasmic polyA polymerase [Caenorhabditis elegans] 1.0E-150
Protein Domains
Database ID Description E-Value
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 9.8E-11
Sequence
Target Sequence 
>C. ELEGANS:182981_AT
cgacccagggttacggcacatattctgtccgtcggtcatcgccaccatctccatcagctc
tatcaagctcaacagcgaattccacatcaaaccgagctccgacgcagcctccaatcctgc
tcaggcacgctgagccagctagtgataagaatcatcaaggaagcgatcatgagcaaaatc
atgatcctaaaattcatttgtacaggtcggctggcaccgcaccgggtggatatactcaat
gcccatctccgtacaaacagccaccaccacaacctccgtctacaccatcatcttccgata
aacggattgagcagcaacaagcagaggattggccgacgcggtttcaacatcctcctccac
aattcagacgcgggcaggatccaatgccagcctcaatagagctccagcataagaccgcca
atcaaacgatgccagttgatattgtacagacgaatcagcagaaaactgtgtcatcttatg
agagggctgcacagtttagagcttctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACCCAGGGTTACGGCACATATTC 110 247 428 Antisense
CACATATTCTGTCCGTCGGTCATCG 6 195 444 Antisense
CCATCTCCATCAGCTCTATCAAGCT 399 271 472 Antisense
AGCTCAACAGCGAATTCCACATCAA 508 79 493 Antisense
TCAGGCACGCTGAGCCAGCTAGTGA 626 621 548 Antisense
GGTGGATATACTCAATGCCCATCTC 403 499 652 Antisense
GATTGGCCGACGCGGTTTCAACATC 530 429 754 Antisense
CCTCCACAATTCAGACGCGGGCAGG 568 265 781 Antisense
TGCCAGCCTCAATAGAGCTCCAGCA 615 585 812 Antisense
GACCGCCAATCAAACGATGCCAGTT 192 383 840 Antisense
GGGCTGCACAGTTTAGAGCTTCTGC 139 493 911 Antisense
Sequence Source Affymetrix Proprietary Database