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[182980_at]

Description T08B1.4 /REP_DB=WormBase Gene ID /WP=CE13417 /TR=O44558 /GB=AAB94175.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 98      6grp_total > 86      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12775
1 2 3 4 range
A 713.4
(-3)
P 		697.7
(-3)
P 		653.9
(-3)
P 		13365.5
(3)
P 		12712
B 722.9
(-3)
P 		705.9
(-3)
P 		743.3
(-3)
P 		12248.5
(3)
P 		11543
C 735.1
(-2.9)
P 		612.2
(-3)
P 		590.2
(-3)
P 		12545.8
(3)
P 		11956
avr 723.8
(-3) 		671.9
(-3) 		662.5
(-3) 		12719.9
(3) 		12057

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1092
1 2 3 4 5 6 range
A 867.3
(-2.6)
P 		917.4
(-2.3)
P 		803.8
(-3)
P 		1101.6
(-1.1)
P 		1005.3
(-1.7)
P 		1745
(3)
P 		941
B 812.2
(-2.9)
P 		793.9
(-3)
P 		912.2
(-2.1)
P 		1259.2
(0.5)
P 		1289.2
(0.7)
P 		1602.4
(3)
P 		809
C 769.7
(-3)
P 		765.5
(-3)
P 		908.1
(-2.2)
P 		1159.9
(-0.8)
P 		1235.9
(-0.4)
P 		1857.5
(3)
P 		1092
avr 816.4
(-3) 		825.6
(-2.9) 		874.7
(-2.6) 		1173.6
(-0.7) 		1176.8
(-0.6) 		1735
(3) 		919
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2459
1 2 3 4 range
A 259.8
(-2.6)
P 		151.5
(-3)
P 		170.9
(-2.9)
P 		1956.4
(3)
P 		1805
B 230.5
(-2.9)
P 		174.3
(-3)
P 		172.2
(-3)
P 		2610.2
(3)
P 		2438
C 243.3
(-2.8)
P 		176
(-3)
P 		205.7
(-2.9)
P 		2115.4
(3)
P 		1939
avr 244.5
(-2.8) 		167.3
(-3) 		182.9
(-3) 		2227.3
(3) 		2060

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 462
1 2 3 4 5 6 range
A 159.9
(-3)
P 		326.3
(0.8)
P 		175.1
(-2.7)
P 		279.4
(-0.3)
P 		303.3
(0.2)
P 		424.8
(3)
P 		265
B 282.6
(-2)
P 		264.2
(-2.3)
P 		221.5
(-3)
P 		333.5
(-1.2)
P 		523.8
(1.8)
P 		597.5
(3)
P 		376
C 285.3
(-2.2)
P 		233.6
(-3)
P 		231.1
(-3)
P 		233.3
(-3)
P 		399.9
(-0.4)
P 		621.8
(3)
P 		391
avr 242.6
(-2.4) 		274.7
(-1.8) 		209.2
(-3) 		282.1
(-1.7) 		409
(0.5) 		548
(3) 		339
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182980_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15514
Sequence Type Exemplar sequence
Representative Public ID T08B1.4 NCBI
Target Description T08B1.4 /REP_DB=WormBase Gene ID /WP=CE13417 /TR=O44558 /GB=AAB94175.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071141
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000025790 ENSEMBL cdna:SNAP chromosome:CEL140:V:1979266:1982394:1 11/11 None
GENEFINDER00000025797 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1979266:1982394:1 11/11 None
T08B1.4 ENSEMBL cdna:known chromosome:CEL140:V:1979265:1982479:1 gene:T08B1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1979664-1982394(+) 94.5 100.0
Public Domain and Genome References
Ensembl T08B1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE66784 Hypothetical protein CBG12141 [Caenorhabditis briggsae] 1.0E-171
blast AAB94175 Hypothetical protein T08B1.4 [Caenorhabditis elegans] ref|NP_503542.3| T08B1.4 [Caenorhabditis elegans] 5.0E-82
blast AAB94175 Hypothetical protein T08B1.4 [Caenorhabditis elegans] ref|NP_503542.3| T08B1.4 [Caenorhabditis elegans] 3.0E-73
blast CAB16547 Hypothetical protein ZK262.2 [Caenorhabditis elegans] ref|NP_507602.1| ZK262.2 [Caenorhabditis elegans] 3.0E-67
blast CAE66784 Hypothetical protein CBG12141 [Caenorhabditis briggsae] 2.0E-65
blast CAB16547 Hypothetical protein ZK262.2 [Caenorhabditis elegans] ref|NP_507602.1| ZK262.2 [Caenorhabditis elegans] 9.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR002921 EMBL-EBI Lipase, class 3 1.5E-42
Sequence
Target Sequence 
>C. ELEGANS:182980_AT
aaaacaaggcttccgatctggctctcaaattaaagtctacaccttcggccagccacgtgt
cggaaatgtgcaattcgctcgcaactttgacgcgattctcccgaacacttatcgagtggt
cttccgacgagacatcgttccacatatgccagcgtgtcacaagaatcagacattcatctc
ggagcacgaaggtggagcaaagccgtgtcacgcagagcaccaggattattatcatcatgg
aacggagatttggtatccggacgagatgagcgctggagcacattatgtcgagtgcctagg
ggctccgaagaatgaagattttggatgctcggatagaatcaagttttttgttgatcaatc
tgatacgtacacctgggatcatcgacattattttggagtcaaggtaccaccatatggaaa
aaccggatgcgatgatctacttcccgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACAAGGCTTCCGATCTGGCTCT 63 131 456 Antisense
GGCCAGCCACGTGTCGGAAATGTGC 462 541 502 Antisense
TGTGCAATTCGCTCGCAACTTTGAC 145 557 522 Antisense
GATTCTCCCGAACACTTATCGAGTG 320 431 549 Antisense
GACGAGACATCGTTCCACATATGCC 335 379 581 Antisense
ATCAGACATTCATCTCGGAGCACGA 148 29 620 Antisense
AGGTGGAGCAAAGCCGTGTCACGCA 136 59 645 Antisense
GGTATCCGGACGAGATGAGCGCTGG 237 505 707 Antisense
TTATGTCGAGTGCCTAGGGGCTCCG 250 679 738 Antisense
GATACGTACACCTGGGATCATCGAC 629 423 817 Antisense
CGGATGCGATGATCTACTTCCCGAA 553 243 879 Antisense
Sequence Source Affymetrix Proprietary Database