[Home] | [Total List]

[182979_at]

Description K08B5.2 /REP_DB=WormBase Gene ID /WP=CE11908 /TR=Q21308 /GB=AAA82338.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 13      4grp_highest_8_8 > 41      4grp_high_8_8 > 42      6grp_highest_nonorm > 70      6grp_total > 22      4grp_total > 53      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 335.7
(3)
P 		274.8
(0.9)
P 		263.2
(0.5)
P 		160.7
(-3)
P 		175
B 315.2
(3)
P 		285.7
(1.1)
P 		221.5
(-3)
P 		223.3
(-2.9)
P 		94
C 332.7
(3)
P 		267.3
(-1.1)
P 		287.1
(0.1)
P 		236.8
(-3)
P 		96
avr 327.9
(3) 		275.9
(0.4) 		257.3
(-0.5) 		206.9
(-3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 275.6
(2.7)
P 		256
(1.7)
P 		282.8
(3)
P 		218.1
(-0.1)
P 		189.5
(-1.5)
P 		157.2
(-3)
P 		126
B 281.9
(-0.1)
P 		386.7
(3)
P 		314.2
(0.9)
P 		266.8
(-0.5)
P 		182.1
(-3)
P 		281.2
(-0.1)
P 		205
C 302.1
(1.3)
P 		360.7
(3)
P 		246
(-0.4)
P 		323.7
(1.9)
P 		158.7
(-3)
P 		191.6
(-2)
P 		202
avr 286.5
(1.2) 		334.5
(3) 		281
(1) 		269.5
(0.5) 		176.8
(-3) 		210
(-1.7) 		158
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 122.2
(3)
P 		59.7
(-0.8)
P 		68.8
(-0.2)
P 		23.5
(-3)
P 		99
B 100.5
(3)
P 		70.6
(-0.4)
P 		51.3
(-2.6)
P 		47.6
(-3)
P 		53
C 110.1
(3)
P 		76.8
(0.2)
P 		100.1
(2.1)
P 		39.9
(-3)
P 		70
avr 110.9
(3) 		69
(-0.4) 		73.4
(-0) 		37
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 50.8
(-1.6)
P 		91
(3)
P 		61.6
(-0.3)
P 		55.3
(-1.1)
P 		57.2
(-0.8)
P 		38.3
(-3)
P 		53
B 98.1
(-0.2)
P 		128.7
(3)
P 		76.3
(-2.4)
P 		70.7
(-3)
P 		74
(-2.7)
P 		104.8
(0.5)
P 		58
C 112
(3)
P 		110.1
(2.8)
P 		62.6
(-1.9)
P 		65.1
(-1.6)
P 		51.3
(-3)
P 		64.1
(-1.7)
P 		61
avr 87
(0.2) 		109.9
(3) 		66.8
(-2.3) 		63.7
(-2.6) 		60.8
(-3) 		69.1
(-2) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182979_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17441
Sequence Type Exemplar sequence
Representative Public ID K08B5.2 NCBI
Target Description K08B5.2 /REP_DB=WormBase Gene ID /WP=CE11908 /TR=Q21308 /GB=AAA82338.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078281(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078281 NCBI Caenorhabditis elegans K08B5.2 (K08B5.2) mRNA, complete cds. 11/11 None
SNAP00000030730 ENSEMBL cdna:SNAP chromosome:CEL140:X:16551148:16552633:-1 11/11 None
K08B5.2 ENSEMBL cdna:known chromosome:CEL140:X:16551144:16552633:-1 gene:K08B5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000030734 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16551143-16552633(-) 99.6 100.0
Public Domain and Genome References
Gene Title
Ensembl K08B5.2
Entrez Gene 187133 Entrez gene
SwissProt Q21308 EMBL-EBI
WormBase CE11908 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82338 Hypothetical protein K08B5.2 [Caenorhabditis elegans] ref|NP_510682.1| K08B5.2 [Caenorhabditis elegans] 1.0E-140
blast CAE69961 Hypothetical protein CBG16354 [Caenorhabditis briggsae] 1.0E-101
Sequence
Target Sequence 
>C. ELEGANS:182979_AT
gggaaagtctctgccaaatctgcaaaaatgtgtgatcatcgagagtgaagagcggaaatg
gatggggaaggatgtgctcatggggctgacttacttcaaatcgctagaaaaattgaaagt
ggttaattgggaaccgtcacatgttacaagaagaggttgtgcttcgcgaaacgagaccat
cccagcgagtactctccgaaacttgatcaacttcacaatcatctgcaataaggagacagt
gtccaaagttttacaatatttactcgagaacgaaatttatttgacaaaatgtgtcaaggc
caaatttaacgtacgtctgtcctcgccggatattccccatcttatcatgaagttcatcga
atgccacccacacattcaagagattgctttcaacgggtttcttttcacaacacaagagca
agtgcaggctttttacgggcaccttcttgcactaccacaacttgaaagagttcaactgga
gaactgttcagttattgaaaggattgagcaggctctacaaaaaaccttcttggacgcttt
acgacggcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAAAGTCTCTGCCAAATCTGCAA 610 493 165 Antisense
AAGGATGTGCTCATGGGGCTGACTT 47 161 232 Antisense
GGGCTGACTTACTTCAAATCGCTAG 502 493 247 Antisense
TGCTTCGCGAAACGAGACCATCCCA 622 579 324 Antisense
GCGAGTACTCTCCGAAACTTGATCA 654 289 349 Antisense
GGATATTCCCCATCTTATCATGAAG 313 509 492 Antisense
GCCACCCACACATTCAAGAGATTGC 367 279 527 Antisense
TGCTTTCAACGGGTTTCTTTTCACA 203 579 549 Antisense
AGTGCAGGCTTTTTACGGGCACCTT 374 51 585 Antisense
CTTCTTGCACTACCACAACTTGAAA 701 219 607 Antisense
CCTTCTTGGACGCTTTACGACGGCG 219 267 689 Antisense
Sequence Source Affymetrix Proprietary Database