[Home] | [Total List]

[182978_at]

Description F41C6.6 /REP_DB=WormBase Gene ID /WP=CE04543 /TR=Q20271 /GB=AAA80447.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 09      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 3.1
(-2.7)
A 		7.1
(-1)
A 		2.4
(-3)
A 		16.2
(3)
A 		14
B 2.7
(-3)
A 		8.5
(-1.9)
A 		14.8
(-0.6)
A 		33.5
(3)
P 		31
C 3.6
(-3)
A 		4.7
(-2.8)
A 		13.1
(-1.5)
A 		42
(3)
A 		38
avr 3.1
(-3) 		6.8
(-2.2) 		10.1
(-1.5) 		30.6
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.4
(-2.8)
A 		1.8
(-3)
A 		19.9
(3)
A 		6.3
(-1.5)
A 		3
(-2.6)
A 		4.3
(-2.2)
A 		18
B 2.6
(-2.8)
A 		2.1
(-3)
A 		5.4
(-1.4)
A 		3.8
(-2.2)
A 		14.3
(3)
A 		2.6
(-2.8)
A 		12
C 2.4
(-2.7)
A 		12.5
(3)
A 		3.7
(-1.9)
A 		2.5
(-2.6)
A 		1.8
(-3)
A 		6.4
(-0.4)
A 		11
avr 2.5
(-3) 		5.5
(-0.5) 		9.7
(3) 		4.2
(-1.6) 		6.4
(0.3) 		4.4
(-1.4) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.1
(-1.3)
A 		1.5
(0)
A 		0.6
(-3)
A 		2.4
(3)
A 		2
B 0.9
(-3)
A 		2.1
(-1.8)
A 		3.4
(-0.6)
A 		7.1
(3)
P 		6
C 1.2
(-3)
A 		1.4
(-2.8)
A 		4.6
(0.5)
A 		7.1
(3)
A 		6
avr 1.1
(-3) 		1.7
(-2.2) 		2.9
(-0.5) 		5.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.6
(-2.7)
A 		4.3
(3)
A 		1.6
(-1.2)
A 		0.9
(-2.2)
A 		1.1
(-1.9)
A 		4
B 0.9
(-2.8)
A 		0.7
(-3)
A 		1.3
(-2.3)
A 		1
(-2.6)
A 		5.8
(3)
A 		1
(-2.6)
A 		5
C 0.9
(-2.3)
A 		3.8
(3)
A 		0.9
(-2.3)
A 		0.5
(-3)
A 		0.6
(-2.8)
A 		2.1
(-0.1)
A 		3
avr 0.7
(-3) 		1.7
(0.5) 		2.2
(2.3) 		1
(-1.9) 		2.4
(3) 		1.4
(-0.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182978_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16406
Sequence Type Exemplar sequence
Representative Public ID F41C6.6 NCBI
Target Description F41C6.6 /REP_DB=WormBase Gene ID /WP=CE04543 /TR=Q20271 /GB=AAA80447.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076762(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076762 NCBI Caenorhabditis elegans F41C6.6 (F41C6.6) mRNA, complete cds. 11/11 None
SNAP00000012724 ENSEMBL cdna:SNAP chromosome:CEL140:X:6881097:6881523:-1 9/11 None
GENEFINDER00000012731 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6881097:6881523:-1 9/11 None
F41C6.6 ENSEMBL cdna:known chromosome:CEL140:X:6881239:6881523:-1 gene:F41C6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6881238-6881523(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41C6.6
Entrez Gene 185600 Entrez gene
SwissProt Q20271 EMBL-EBI
WormBase CE04543 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80447 Hypothetical protein F41C6.6 [Caenorhabditis elegans] ref|NP_509163.1| F41C6.6 [Caenorhabditis elegans] 2.0E-39
blast CAE65812 Hypothetical protein CBG10922 [Caenorhabditis briggsae] 1.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000012724 2 2-24,29-48
GENEFINDER00000012731 2 2-24,29-48
Sequence
Target Sequence 
>C. ELEGANS:182978_AT
cttggtttcactatcccatttctaatgaactgtgcactcatcggctccacggctctcatg
atgatccacaacgaggtaaaaaagccctctgttcatagtggcatcaatcacgatgtcgct
gtgcgtgacactggtagtcatcaaagcaagcttccatctgataacagagctcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGGTTTCACTATCCCATTTCTAA 515 217 22 Antisense
TCACTATCCCATTTCTAATGAACTG 407 627 29 Antisense
TAATGAACTGTGCACTCATCGGCTC 120 637 44 Antisense
TCATGATGATCCACAACGAGGTAAA 47 623 77 Antisense
GGTAAAAAAGCCCTCTGTTCATAGT 249 503 96 Antisense
CCCTCTGTTCATAGTGGCATCAATC 89 259 106 Antisense
ATCAATCACGATGTCGCTGTGCGTG 221 27 124 Antisense
GTCGCTGTGCGTGACACTGGTAGTC 386 475 136 Antisense
CTGGTAGTCATCAAAGCAAGCTTCC 338 239 152 Antisense
GTCATCAAAGCAAGCTTCCATCTGA 554 467 158 Antisense
GCTTCCATCTGATAACAGAGCTCGC 219 307 171 Antisense
Sequence Source Affymetrix Proprietary Database