[Home] | [Total List]

[182974_at]

Description T01C8.3 /REP_DB=WormBase Gene ID /WP=CE07460 /TR=Q22064 /GB=AAB00575.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_total > 34      4grp_total > 06      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 136.7
(-0.7)
P 		102.9
(-3)
P 		118.5
(-2)
P 		192.5
(3)
P 		90
B 137.6
(0.9)
P 		125.5
(-3)
P 		140.9
(2)
P 		144
(3)
P 		19
C 155.4
(0.7)
P 		91.2
(-3)
P 		112.8
(-1.8)
P 		196.2
(3)
P 		105
avr 143.2
(0.1) 		106.5
(-3) 		124.1
(-1.5) 		177.6
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 120.8
(3)
P 		99.8
(0.8)
P 		120.1
(2.9)
P 		62.5
(-3)
A 		108.6
(1.7)
P 		94.7
(0.3)
P 		58
B 107.9
(1.5)
P 		116.8
(3)
P 		115.9
(2.8)
P 		87.5
(-2.1)
A 		82
(-3)
P 		90.1
(-1.6)
P 		35
C 123.7
(3)
P 		77
(-1.5)
P 		106.6
(1.3)
P 		62.1
(-3)
A 		86.5
(-0.6)
P 		79.2
(-1.3)
P 		62
avr 117.5
(3) 		97.9
(0.5) 		114.2
(2.6) 		70.7
(-3) 		92.4
(-0.2) 		88
(-0.8) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 49.8
(3)
P 		22.3
(-3)
P 		31
(-1.1)
P 		28.2
(-1.7)
P 		28
B 43.9
(3)
P 		31
(-2.9)
P 		32.7
(-2.1)
P 		30.7
(-3)
P 		13
C 51.4
(3)
P 		26.2
(-3)
P 		39.3
(0.1)
P 		33.1
(-1.4)
P 		25
avr 48.4
(3) 		26.5
(-3) 		34.3
(-0.9) 		30.7
(-1.8) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 22.3
(-1)
P 		35.5
(3)
P 		26.1
(0.1)
P 		15.9
(-3)
A 		32.8
(2.2)
P 		23.1
(-0.8)
P 		20
B 37.6
(2.5)
P 		38.9
(3)
P 		28.2
(-1.1)
P 		23.2
(-3)
A 		33.3
(0.9)
P 		33.6
(1)
P 		16
C 45.9
(3)
P 		23.5
(-1)
P 		27.1
(-0.4)
P 		12.5
(-3)
A 		28
(-0.2)
P 		26.5
(-0.5)
P 		33
avr 35.3
(3) 		32.6
(2.1) 		27.1
(0.3) 		17.2
(-3) 		31.4
(1.7) 		27.7
(0.5) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182974_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18048
Sequence Type Exemplar sequence
Representative Public ID T01C8.3 NCBI
Target Description T01C8.3 /REP_DB=WormBase Gene ID /WP=CE07460 /TR=Q22064 /GB=AAB00575.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078305(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078305 NCBI Caenorhabditis elegans T01C8.3 (T01C8.3) mRNA, complete cds. 11/11 None
GENEFINDER00000021228 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16778191:16782927:-1 11/11 None
T01C8.3 ENSEMBL cdna:known chromosome:CEL140:X:16780907:16782158:-1 gene:T01C8.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021218 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16780906-16782010(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01C8.3
Entrez Gene 187947 Entrez gene
SwissProt Q22064 EMBL-EBI
WormBase CE32205 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00575 Hypothetical protein T01C8.3 [Caenorhabditis elegans] ref|NP_510706.2| T01C8.3 [Caenorhabditis elegans] 1.0E-127
blast AAB00575 Hypothetical protein T01C8.3 [Caenorhabditis elegans] ref|NP_510706.2| T01C8.3 [Caenorhabditis elegans] 1.0E-109
blast CAE69895 Hypothetical protein CBG16245 [Caenorhabditis briggsae] 1.0E-66
blast CAE69895 Hypothetical protein CBG16245 [Caenorhabditis briggsae] 3.0E-51
Sequence
Target Sequence 
>C. ELEGANS:182974_AT
ctcctaccgacttgccattgggatgttccacaaacagccgaggaagcattttctgtattt
gcaacagtacggattactgtaatgagatgaccaacgtaaaagaggagaaaaatatcacgt
atttaatttgtgaatacgctaaagattcgatgttcagaggagccgattgtgtgcaaccgt
ggtgtgtgaagacagcatctagttatatggatgagatggttgaatgcggagaagggacat
atgaaatggagatgtatgatattggattcgtctacagtggtatgttactacctatcaact
catgctatgccgttgcagatgactcacgttatgacaaaagtcaaatttgtacatataaag
tgaacaaaacaactccatacaaactgaaagtgcccggaagtaccaaatgctttgctccag
gagaagtcatgacaaggatgaaaaattcaacgtgtattgggcagttctgttactcagcca
gcgctgtttttggatgcatttctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCTACCGACTTGCCATTGGGATG 481 231 125 Antisense
TGGGATGTTCCACAAACAGCCGAGG 153 553 143 Antisense
AGAGGAGCCGATTGTGTGCAACCGT 214 67 280 Antisense
GGATTCGTCTACAGTGGTATGTTAC 124 509 388 Antisense
CTACCTATCAACTCATGCTATGCCG 577 225 412 Antisense
GCTATGCCGTTGCAGATGACTCACG 679 303 428 Antisense
GAAAGTGCCCGGAAGTACCAAATGC 537 339 510 Antisense
GTACCAAATGCTTTGCTCCAGGAGA 294 457 524 Antisense
ATTGGGCAGTTCTGTTACTCAGCCA 304 3 580 Antisense
GTTACTCAGCCAGCGCTGTTTTTGG 452 445 593 Antisense
GCGCTGTTTTTGGATGCATTTCTCA 668 287 605 Antisense
Sequence Source Affymetrix Proprietary Database