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[182972_at]

Description C39F7.5 /REP_DB=WormBase Gene ID /WP=CE16906 /TR=Q9UAQ7 /GB=AAC69214.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_total > 09      4grp_total > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 133.8
(3)
P 		125.7
(1.4)
P 		103.2
(-3)
P 		115.3
(-0.6)
P 		31
B 114.2
(3)
P 		94.1
(0.4)
P 		88.1
(-0.4)
P 		68.6
(-3)
P 		46
C 115.4
(3)
P 		106.7
(0.6)
P 		95.6
(-2.4)
P 		93.4
(-3)
P 		22
avr 121.1
(3) 		108.8
(0.4) 		95.6
(-2.3) 		92.4
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 64.6
(1.4)
A 		65.8
(1.7)
P 		64.1
(1.4)
P 		73.1
(3)
P 		41.4
(-2.8)
A 		40.2
(-3)
A 		33
B 75.8
(3)
P 		52.8
(0.1)
A 		31.7
(-2.5)
A 		74.3
(2.8)
P 		27.4
(-3)
A 		43.6
(-1)
P 		48
C 85
(3)
P 		30.6
(-2.9)
A 		51.3
(-0.6)
P 		29.5
(-3)
A 		69.9
(1.4)
P 		37.6
(-2.1)
A 		56
avr 75.1
(3) 		49.7
(-1.4) 		49
(-1.5) 		59
(0.2) 		46.2
(-2) 		40.5
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 48.7
(3)
P 		27.3
(-1)
P 		27
(-1.1)
P 		16.9
(-3)
P 		32
B 36.4
(3)
P 		23.3
(-0.6)
P 		20.4
(-1.4)
P 		14.6
(-3)
P 		22
C 38.2
(3)
P 		30.7
(1)
P 		33.3
(1.7)
P 		15.7
(-3)
P 		23
avr 41.1
(3) 		27.1
(-0.3) 		26.9
(-0.4) 		15.7
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 11.9
(-2.1)
A 		23.4
(3)
P 		14
(-1.1)
P 		18.6
(0.9)
P 		12.5
(-1.8)
A 		9.8
(-3)
A 		14
B 26.4
(3)
P 		17.6
(0.2)
A 		7.7
(-3)
A 		19.7
(0.9)
P 		11.1
(-1.9)
A 		16.2
(-0.3)
P 		19
C 31.5
(3)
P 		9.3
(-2.2)
A 		13
(-1.3)
P 		5.9
(-3)
A 		22.6
(0.9)
P 		12.6
(-1.4)
A 		26
avr 23.3
(3) 		16.8
(-0.3) 		11.6
(-3) 		14.7
(-1.4) 		15.4
(-1.1) 		12.9
(-2.3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182972_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15586
Sequence Type Exemplar sequence
Representative Public ID C39F7.5 NCBI
Target Description C39F7.5 /REP_DB=WormBase Gene ID /WP=CE16906 /TR=Q9UAQ7 /GB=AAC69214.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070997(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070997 NCBI Caenorhabditis elegans C39F7.5 (C39F7.5) mRNA, complete cds. 11/11 None
C39F7.5 ENSEMBL cdna:known chromosome:CEL140:V:1264603:1269934:1 gene:C39F7.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044336 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1264624-1267355(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C39F7.5
Entrez Gene 178621 Entrez gene
SwissProt Q9UAQ7 EMBL-EBI
WormBase CE29087 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.26930.1.S1_AT similar to BTB (POZ) domain containing 7 isoform 1 cfa
DROSOPHILA_2:1632815_AT dm
DROSGENOME1:145159_AT dm
CHICKEN:GGAAFFX.6850.1.S1_AT similar to KIAA1525 protein gga
MOUSE430_2:1432910_AT BTB (POZ) domain containing 7 mm
MOE430B:1432910_AT BTB (POZ) domain containing 7 mm
MG-U74BV2:114332_AT BTB (POZ) domain containing 7 mm
MG-U74CV2:137685_AT BTB (POZ) domain containing 7 mm
MOE430B:1454874_AT BTB (POZ) domain containing 7 mm
MOUSE430_2:1454874_AT BTB (POZ) domain containing 7 mm
MOUSE430_2:1454414_AT BTB (POZ) domain containing 7 mm
MOE430B:1454414_AT BTB (POZ) domain containing 7 mm
MU19KSUBB:TC33825_AT BTB (POZ) domain containing 7 mm
MOE430B:1442061_AT BTB (POZ) domain containing 7, mRNA (cDNA clone MGC:66540 IMAGE:5702276) mm
MOUSE430_2:1442061_AT BTB (POZ) domain containing 7, mRNA (cDNA clone MGC:66540 IMAGE:5702276) mm
RG-U34C:RC_AI071191_AT BTB (POZ) domain containing 7 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC69214 Hypothetical protein C39F7.5 [Caenorhabditis elegans] ref|NP_503398.1| C39F7.5 [Caenorhabditis elegans] 0.0
blast CAE58007 Hypothetical protein CBG01076 [Caenorhabditis briggsae] 0.0
blast AAL49329 RH22885p [Drosophila melanogaster] 6.0E-55
Sequence
Target Sequence 
>C. ELEGANS:182972_AT
gagatgctcgaacaactgtgcacagattttggatgttttaagaaacttgaagaagatgtg
aagcatatgtacaagcaggatctgaagcatggcgacttgataattgaagttgtcgacgga
aaaaacaccgaagaaaacagcgagagcttcaaaattcgatgctcttctctaatcgctgct
tcacgaagtaaaatcatacgatcgttactgctgagaaagttgactgagaaaaatgaagga
agttcgacaagtcgtcccaaacgaattgtcttctctgaactaatattcccacaagcattc
gctccgatatttgtctcatttctgtacactgatcgactggattggagtttggcgccaaaa
tccgaagactctatatcttcgttatcacaagccaaagctataacgaatagtggtagaact
ccggatttacaactggctagagctctgcaattaattgagattgcacggtttttcgaagtc
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATGCTCGAACAACTGTGCACAG 135 397 562 Antisense
AAGCAGGATCTGAAGCATGGCGACT 615 147 634 Antisense
GCTTCAAAATTCGATGCTCTTCTCT 558 305 707 Antisense
TTCTCTAATCGCTGCTTCACGAAGT 316 691 726 Antisense
GTCCCAAACGAATTGTCTTCTCTGA 597 475 815 Antisense
ACTAATATTCCCACAAGCATTCGCT 290 97 840 Antisense
GCATTCGCTCCGATATTTGTCTCAT 559 307 856 Antisense
GTCTCATTTCTGTACACTGATCGAC 603 469 874 Antisense
GTTTGGCGCCAAAATCCGAAGACTC 196 451 908 Antisense
GAACTCCGGATTTACAACTGGCTAG 348 347 977 Antisense
GAGATTGCACGGTTTTTCGAAGTCG 289 397 1018 Antisense
Sequence Source Affymetrix Proprietary Database