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[182970_at]

Description F55G11.4 /REP_DB=WormBase Gene ID /WP=CE18750 /TR=Q9XTF7 /GB=CAB03527.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_high_8_8 > 52      6grp_highest_nonorm > 96      6grp_total > 95      4grp_total > 59      6grp_highest_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4484
1 2 3 4 range
A 3134.9
(1.1)
P 		4547.8
(3)
P 		3492.2
(1.6)
P 		93.8
(-3)
P 		4454
B 2354.6
(0.2)
P 		4295.1
(3)
P 		3927.3
(2.5)
P 		64.3
(-3)
A 		4231
C 2684.4
(0.9)
P 		4090.3
(3)
P 		3812.2
(2.6)
P 		121.9
(-3)
P 		3968
avr 2724.6
(0.7) 		4311.1
(3) 		3743.9
(2.2) 		93.3
(-3) 		4218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1389
1 2 3 4 5 6 range
A 456.5
(-2.4)
P 		605.9
(-1.7)
P 		352.6
(-3)
P 		828.3
(-0.5)
P 		1106
(1)
P 		1484.7
(3)
P 		1132
B 405.9
(-3)
P 		487.3
(-2.5)
P 		432.2
(-2.8)
P 		734
(-1.1)
P 		1389.6
(2.8)
P 		1422.2
(3)
P 		1016
C 462.8
(-3)
P 		466.1
(-3)
P 		471.3
(-3)
P 		832.9
(-1.3)
P 		1741.7
(3)
P 		1465
(1.7)
P 		1279
avr 441.7
(-2.9) 		519.8
(-2.4) 		418.7
(-3) 		798.4
(-0.8) 		1412.4
(2.7) 		1457.3
(3) 		1039
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1315
1 2 3 4 range
A 1141.4
(3)
P 		987.2
(2.2)
P 		912.9
(1.8)
P 		13.7
(-3)
P 		1128
B 750.8
(1.2)
P 		1060.8
(3)
P 		910
(2.1)
P 		13.7
(-3)
A 		1047
C 888.6
(1)
P 		1176
(2.3)
P 		1328.7
(3)
P 		20.6
(-3)
P 		1308
avr 926.9
(2.2) 		1074.7
(3) 		1050.5
(2.9) 		16
(-3) 		1059

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 488
1 2 3 4 5 6 range
A 84.1
(-2.8)
P 		215.5
(-0.1)
P 		76.8
(-3)
P 		210.1
(-0.2)
P 		333.7
(2.4)
P 		361.5
(3)
P 		285
B 141.2
(-2.5)
P 		162.2
(-2.3)
P 		105
(-3)
P 		194.4
(-1.8)
P 		564.6
(3)
P 		530.3
(2.6)
P 		460
C 171.5
(-2.3)
P 		142.2
(-2.7)
P 		120
(-3)
P 		167.5
(-2.4)
P 		563.6
(3)
P 		490.4
(2)
P 		444
avr 132.3
(-2.5) 		173.3
(-1.9) 		100.6
(-3) 		190.7
(-1.6) 		487.3
(3) 		460.7
(2.6) 		387
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182970_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8774
Sequence Type Exemplar sequence
Representative Public ID F55G11.4 NCBI
Target Description F55G11.4 /REP_DB=WormBase Gene ID /WP=CE18750 /TR=Q9XTF7 /GB=CAB03527.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070084(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070084 NCBI Caenorhabditis elegans F55G11.4 (F55G11.4) mRNA, complete cds. 11/11 None
SNAP00000011393 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12974530:12975533:1 11/11 None
GENEFINDER00000011405 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12974604:12982000:1 10/11 None
F55G11.4 ENSEMBL cdna:known chromosome:CEL140:IV:12973606:12975553:1 gene:F55G11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12973634-12975539(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55G11.4
Entrez Gene 178248 Entrez gene
SwissProt Q9XTF7 EMBL-EBI
WormBase CE18750 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03527 Hypothetical protein F55G11.4 [Caenorhabditis elegans] emb|CAB05224.1| Hypothetical protein F55G11.4 [Caenorhabditis elegans] ref|NP_502485.1| F55G11.4 [Caenorhabditis elegans] 0.0
blast CAB03521 Hypothetical protein K10D11.1 [Caenorhabditis elegans] ref|NP_502486.2| Downstream Of DAF-16 (regulated by DAF-16) family member (dod-17) [Caenorhabditis elegans] 0.0
blast CAB03526 Hypothetical protein K10D11.2 [Caenorhabditis elegans] ref|NP_502487.1| K10D11.2 [Caenorhabditis elegans] 1.0E-164
blast CAB05218 Hypothetical protein F55G11.2 [Caenorhabditis elegans] ref|NP_502483.1| F55G11.2 [Caenorhabditis elegans] 1.0E-145
blast CAB05220 Hypothetical protein F55G11.8 [Caenorhabditis elegans] ref|NP_502481.1| F55G11.8 [Caenorhabditis elegans] 1.0E-139
blast CAB05220 Hypothetical protein F55G11.8 [Caenorhabditis elegans] ref|NP_502481.1| F55G11.8 [Caenorhabditis elegans] 1.0E-130
blast CAB03527 Hypothetical protein F55G11.4 [Caenorhabditis elegans] emb|CAB05224.1| Hypothetical protein F55G11.4 [Caenorhabditis elegans] ref|NP_502485.1| F55G11.4 [Caenorhabditis elegans] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 5.0E-48
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 7.1E-49
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.1E-47
Sequence
Target Sequence 
>C. ELEGANS:182970_AT
gttgctatggaatacgctgcaccaggaggaatcactttattgacatttccagaagatttg
aaaaactataactcattgagaagcacacttatatatgatggaagcagcttgacctctgca
acctatgtttcaaatctattccttctcaaccagtcaaagaagcaatggacatctagtcaa
gacggtattgtcgtagtgaacgtcgaagccagtcgttccatgaataaacttcttattcaa
ggatccgtgtatttggctggaatcgatgagatagtggaactccacccgcaacctaactcg
atctataatggaactgtgaacgcgggagcacatatgtcttcacttgttgcagtatctgat
ctcgaattgcaaatgatcgatgttcagatgaaagatgactccactgtctcagtttactat
ggatctccagacgcattcactctcgataaaacttacacaggagcagagctgaaaaaagca
cttccactgccatttggcggatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCTATGGAATACGCTGCACCAG 697 439 481 Antisense
ACGCTGCACCAGGAGGAATCACTTT 397 91 494 Antisense
GATGGAAGCAGCTTGACCTCTGCAA 349 407 577 Antisense
TGACCTCTGCAACCTATGTTTCAAA 161 571 590 Antisense
TTCAAATCTATTCCTTCTCAACCAG 154 685 609 Antisense
AGGATCCGTGTATTTGGCTGGAATC 633 55 720 Antisense
GCGGGAGCACATATGTCTTCACTTG 454 293 802 Antisense
GTTGCAGTATCTGATCTCGAATTGC 410 439 826 Antisense
ATGACTCCACTGTCTCAGTTTACTA 226 45 875 Antisense
ACTATGGATCTCCAGACGCATTCAC 81 101 896 Antisense
ACTTCCACTGCCATTTGGCGGATAT 512 103 960 Antisense
Sequence Source Affymetrix Proprietary Database