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[182969_at]

Description F43E2.1 /REP_DB=WormBase Gene ID /WP=CE28325 /TR=O02094 /GB=AAK70648.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 80      6grp_total > 24      4grp_total > 31      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 269.8
(3)
P 		190.2
(-3)
P 		230
(0)
P 		216.4
(-1)
P 		80
B 330.1
(3)
P 		208.1
(-2.7)
P 		202.5
(-3)
P 		213.2
(-2.5)
P 		128
C 211
(-0.3)
P 		187.1
(-1.4)
P 		153.3
(-3)
P 		283.9
(3)
P 		131
avr 270.3
(3) 		195.1
(-3) 		195.3
(-3) 		237.8
(0.4) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 279.7
(3)
P 		204.2
(-1.5)
P 		230.5
(0.1)
P 		197.7
(-1.8)
P 		193.2
(-2.1)
P 		178
(-3)
P 		102
B 257.5
(0.9)
P 		249
(0.5)
P 		295.5
(3)
P 		193.2
(-2.6)
P 		188.2
(-2.8)
P 		185.4
(-3)
P 		110
C 235.7
(0.7)
P 		294.4
(3)
P 		216.3
(-0.1)
P 		257.8
(1.6)
P 		140.9
(-3)
P 		231.7
(0.5)
P 		154
avr 257.6
(3) 		249.2
(2.4) 		247.4
(2.3) 		216.2
(0) 		174.1
(-3) 		198.4
(-1.3) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 98.2
(3)
P 		41.3
(-2.1)
P 		60.1
(-0.4)
P 		31.7
(-3)
P 		67
B 105.3
(3)
P 		51.4
(-2.4)
P 		46.9
(-2.8)
P 		45.4
(-3)
P 		60
C 69.9
(3)
P 		53.8
(-1.4)
P 		53.4
(-1.5)
P 		47.9
(-3)
P 		22
avr 91.1
(3) 		48.8
(-2.1) 		53.5
(-1.6) 		41.7
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 51.6
(-1.3)
P 		72.6
(3)
P 		50.2
(-1.6)
P 		50.1
(-1.6)
P 		58.3
(0.1)
P 		43.3
(-3)
P 		29
B 89.6
(3)
P 		82.9
(2)
P 		71.7
(0.2)
P 		51.2
(-3)
P 		76.5
(1)
P 		69.1
(-0.2)
P 		38
C 87.4
(2.7)
P 		89.8
(3)
P 		55.1
(-1.7)
P 		51.8
(-2.2)
P 		45.6
(-3)
P 		77.6
(1.3)
P 		44
avr 76.2
(1.9) 		81.8
(3) 		59
(-1.4) 		51
(-3) 		60.1
(-1.2) 		63.3
(-0.6) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182969_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5545
Sequence Type Exemplar sequence
Representative Public ID F43E2.1 NCBI
Target Description F43E2.1 /REP_DB=WormBase Gene ID /WP=CE28325 /TR=O02094 /GB=AAK70648.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063145(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063145 NCBI Caenorhabditis elegans F43E2.1 (F43E2.1) mRNA, complete cds. 11/11 None
SNAP00000044498 ENSEMBL cdna:SNAP chromosome:CEL140:II:7375209:7377116:1 11/11 None
GENEFINDER00000044506 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7375152:7377116:1 11/11 None
F43E2.1 ENSEMBL cdna:known chromosome:CEL140:II:7375209:7377485:1 gene:F43E2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7374431-7377113(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43E2.1
Entrez Gene 185708 Entrez gene
SwissProt O02094 EMBL-EBI
WormBase CE31943 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK70648 Hypothetical protein F43E2.1 [Caenorhabditis elegans] ref|NP_495546.2| F43E2.1 [Caenorhabditis elegans] 0.0
blast T34046 hypothetical protein F43E2.1 - Caenorhabditis elegans 0.0
blast CAE67607 Hypothetical protein CBG13152 [Caenorhabditis briggsae] 7.0E-86
Sequence
Target Sequence 
>C. ELEGANS:182969_AT
tgatctcactgttgttcagcttctctaccttttcgcttgtcaatactccaaccatgtggt
attgctgaattatcgattcaatatgcgaaatggtgaaattgaagctctatctcaaaagga
tcaagactatcagatcactattctcgacgcctacgatgtgcgaaatccaggaagaagtgc
gcggaatgctttggatcttgtgaaaactctcgaagcattgaaaagcttgttggtgcagcc
ccatgaaggaatgttcaaaactgtcatggaaatcacaaggaatagaacgtatgagagagt
agtaccgcctccacaagttctctatcaggactatgacatgcagtttggtgctgatccata
caatatgccattggtcgggtctgtcgagtatcagcaatggctagaacaggtggcaatgca
tcatcagattcaaatgatgcaaggacaaatgatgcagcagcaaatcgtcttcacagcacc
ggagatgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATCTCACTGTTGTTCAGCTTCTC 476 565 1197 Antisense
TACCTTTTCGCTTGTCAATACTCCA 665 649 1222 Antisense
TATCAGATCACTATTCTCGACGCCT 65 661 1324 Antisense
ATTCTCGACGCCTACGATGTGCGAA 250 11 1336 Antisense
AGTGCGCGGAATGCTTTGGATCTTG 293 59 1372 Antisense
CTTGTTGGTGCAGCCCCATGAAGGA 704 217 1422 Antisense
TATGAGAGAGTAGTACCGCCTCCAC 292 655 1486 Antisense
GCCTCCACAAGTTCTCTATCAGGAC 710 281 1503 Antisense
TGGTCGGGTCTGTCGAGTATCAGCA 107 551 1568 Antisense
TGCAGCAGCAAATCGTCTTCACAGC 417 577 1649 Antisense
TCGTCTTCACAGCACCGGAGATGTA 692 601 1661 Antisense
Sequence Source Affymetrix Proprietary Database