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[182968_at]

Description ZK1010.2 /REP_DB=WormBase Gene ID /WP=CE15497 /TR=O18281 /GB=CAB04968.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 89      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 82      6grp_total > 99      4grp_total > 59      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 329
1 2 3 4 range
A 331.2
(0.5)
P 		407.1
(3)
P 		403
(2.9)
P 		224.5
(-3)
P 		183
B 335
(0.2)
P 		446.6
(2.3)
P 		486.9
(3)
P 		157.8
(-3)
P 		329
C 338.5
(0.5)
P 		454.3
(3)
P 		428.6
(2.4)
P 		174.7
(-3)
P 		280
avr 334.9
(0.5) 		436
(2.9) 		439.5
(3) 		185.7
(-3) 		254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 324.3
(1.3)
P 		336.7
(2.1)
P 		257.2
(-3)
P 		295.7
(-0.5)
P 		334.7
(2)
P 		351.1
(3)
P 		94
B 264.8
(-2.7)
P 		280.3
(-1.8)
P 		259.1
(-3)
P 		281.9
(-1.7)
P 		364.1
(3)
P 		333.3
(1.2)
P 		105
C 397.9
(1.8)
P 		260.6
(-2.7)
P 		313.6
(-0.9)
P 		250.1
(-3)
P 		435.3
(3)
P 		320.2
(-0.7)
P 		185
avr 329
(0.1) 		292.5
(-2) 		276.6
(-3) 		275.9
(-3) 		378
(3) 		334.9
(0.5) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 120.6
(3)
P 		88.4
(0.8)
P 		105.4
(2)
P 		32.9
(-3)
P 		88
B 106.8
(2.5)
P 		110.3
(2.8)
P 		112.8
(3)
P 		33.6
(-3)
P 		79
C 112.1
(1.1)
P 		130.6
(2.1)
P 		149.4
(3)
P 		29.5
(-3)
P 		120
avr 113.2
(2.4) 		109.8
(2.2) 		122.5
(3) 		32
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 59.8
(-2.6)
P 		119.8
(3)
P 		56
(-3)
P 		75
(-1.2)
P 		101
(1.2)
P 		85.5
(-0.2)
P 		64
B 92.1
(-0.9)
P 		93.3
(-0.9)
P 		62.9
(-3)
P 		74.7
(-2.2)
P 		147.9
(3)
P 		124.3
(1.3)
P 		85
C 147.5
(3)
P 		79.5
(-1.2)
P 		79.8
(-1.2)
P 		50.3
(-3)
P 		140.8
(2.6)
P 		107.2
(0.5)
P 		97
avr 99.8
(0.2) 		97.5
(-0.1) 		66.2
(-3) 		66.7
(-3) 		129.9
(3) 		105.7
(0.7) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182968_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6319
Sequence Type Exemplar sequence
Representative Public ID ZK1010.2 NCBI
Target Description ZK1010.2 /REP_DB=WormBase Gene ID /WP=CE15497 /TR=O18281 /GB=CAB04968.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067293(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067293 NCBI Caenorhabditis elegans ZK1010.2 (ZK1010.2) mRNA, complete cds. 11/11 None
GENEFINDER00000035106 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12975785:12977378:-1 11/11 None
SNAP00000035097 ENSEMBL cdna:SNAP chromosome:CEL140:III:12975893:12977378:-1 11/11 None
ZK1010.2 ENSEMBL cdna:known chromosome:CEL140:III:12974592:12977378:-1 gene:ZK1010.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12975875-12977374(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1010.2
Entrez Gene 176717 Entrez gene
SwissProt O18281 EMBL-EBI
WormBase CE33903 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605442_S_AT similar to CG11679-PA cfa
CANINE:1606034_S_AT similar to CG11679-PA cfa
CANINE_2:CFA.1685.1.A1_AT similar to CG11679-PA cfa
CANINE_2:CFA.1685.1.A1_S_AT similar to CG11679-PA cfa
CANINE_2:CFA.1700.1.A1_AT similar to CG11679-PA cfa
CANINE_2:CFAAFFX.1593.1.S1_S_AT similar to CG11679-PA cfa
DROSOPHILA_2:1635654_AT dm
DROSGENOME1:153143_AT dm
CHICKEN:GGA.3216.1.S1_AT similar to hypothetical protein FLJ20627 gga
CHICKEN:GGAAFFX.24066.1.S1_AT similar to hypothetical protein FLJ20627 gga
HG-U133_PLUS_2:220329_S_AT chromosome 6 open reading frame 96 hs
HG-U133A:220329_S_AT chromosome 6 open reading frame 96 hs
HG-U133A_2:220329_S_AT chromosome 6 open reading frame 96 hs
U133_X3P:G8923583_3P_A_AT chromosome 6 open reading frame 96 hs
U133_X3P:HS2.238270.2.S1_3P_S_AT chromosome 6 open reading frame 96 hs
U133_X3P:HS2.238270.2.S1_3P_AT chromosome 6 open reading frame 96 hs
U133_X3P:220329_3P_S_AT chromosome 6 open reading frame 96 hs
U133_X3P:1555201_3P_A_AT chromosome 6 open reading frame 96 hs
HG-U133_PLUS_2:1555201_A_AT chromosome 6 open reading frame 96 hs
HG-U95E:77401_AT chromosome 6 open reading frame 96 hs
MU11KSUBA:AA517191_S_AT RIKEN cDNA 0610042C05 gene mm
MG-U74AV2:104537_AT RIKEN cDNA 0610042C05 gene mm
MOE430A:1424505_AT RIKEN cDNA 0610042C05 gene mm
MOUSE430A_2:1424505_AT RIKEN cDNA 0610042C05 gene mm
MOUSE430_2:1424505_AT RIKEN cDNA 0610042C05 gene mm
MOE430B:1440281_AT RIKEN cDNA 0610042C05 gene mm
MOUSE430_2:1440281_AT RIKEN cDNA 0610042C05 gene mm
MU19KSUBA:TC21270_AT RIKEN cDNA 0610042C05 gene, mRNA (cDNA clone MGC:37398 IMAGE:4977394) mm
MU19KSUBB:TC32272_AT RIKEN cDNA 0610042C05 gene, mRNA (cDNA clone MGC:37398 IMAGE:4977394) mm
MU19KSUBB:TC32272_G_AT RIKEN cDNA 0610042C05 gene, mRNA (cDNA clone MGC:37398 IMAGE:4977394) mm
MU19KSUBC:TC41611_AT RIKEN cDNA 0610042C05 gene, mRNA (cDNA clone MGC:37398 IMAGE:4977394) mm
RG-U34C:RC_AI071450_AT Similar to hypothetical protein FLJ20627 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB04968 Hypothetical protein ZK1010.2 [Caenorhabditis elegans] emb|CAD90181.1| Hypothetical protein ZK1010.2 [Caenorhabditis elegans] ref|NP_499694.2| ZK1010.2 [Caenorhabditis elegans] 0.0
blast CAB04968 Hypothetical protein ZK1010.2 [Caenorhabditis elegans] emb|CAD90181.1| Hypothetical protein ZK1010.2 [Caenorhabditis elegans] ref|NP_499694.2| ZK1010.2 [Caenorhabditis elegans] 1.0E-169
blast CAE69560 Hypothetical protein CBG15772 [Caenorhabditis briggsae] 1.0E-149
blast XP_782380 PREDICTED: similar to CG11679-PA [Strongylocentrotus purpuratus] 2.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR003734 EMBL-EBI Protein of unknown function DUF155 6.2E-13
Pfam IPR003734 EMBL-EBI Protein of unknown function DUF155 1.5E-9
Pfam IPR003734 EMBL-EBI Protein of unknown function DUF155 4.6E-9
Sequence
Target Sequence 
>C. ELEGANS:182968_AT
cgaggacgcggatgacagcttgcactttgtcaaaaaactggaatataccatcaatccagg
cgaactcagtgaaattttcgtgtttcgagatggagttgtcgttttttggaacgttgattc
tagtcagcgatcgcatattctacgggagctcgaacgatacgcagatgctccatatgactc
gatgattgtgatggatgagcaggatagaatgttctataaattttcagagcagtctacagg
atccaccattcgtcaagatcgtttctacctctcgggaaaacatttggacgccttccacgg
ctcgaacgaagcaattttagagcgatttgcactcagtcagggattcgctgcttccgtgaa
aatcggagtctgggaaagtcttctaaacaatcttgcggagccactctccaacactacaaa
atcgctaactctgggaaagattccgtggagccggaagcaggctctcatgagatccggaga
attcgcagctcttcgacactcgattaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGGACGCGGATGACAGCTTGCAC 38 251 306 Antisense
GCGATCGCATATTCTACGGGAGCTC 599 289 432 Antisense
ACGCAGATGCTCCATATGACTCGAT 574 91 464 Antisense
TCAGAGCAGTCTACAGGATCCACCA 346 623 529 Antisense
ATTCGTCAAGATCGTTTCTACCTCT 489 9 553 Antisense
GCACTCAGTCAGGGATTCGCTGCTT 469 315 634 Antisense
TAAACAATCTTGCGGAGCCACTCTC 76 641 689 Antisense
CCACTCTCCAACACTACAAAATCGC 547 271 706 Antisense
GCCGGAAGCAGGCTCTCATGAGATC 503 283 755 Antisense
GAGATCCGGAGAATTCGCAGCTCTT 43 397 774 Antisense
GCAGCTCTTCGACACTCGATTAATC 677 313 790 Antisense
Sequence Source Affymetrix Proprietary Database