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[182966_at]

Description ZK154.1 /REP_DB=WormBase Gene ID /WP=CE15255 /TR=Q94312 /GB=AAB09093.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_high_8_8 > 54      6grp_highest_nonorm > 44      6grp_total > 20      4grp_total > 57      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4307
1 2 3 4 range
A 681
(-2.3)
P 		3897.4
(2.2)
P 		4436.4
(3)
P 		146.9
(-3)
A 		4290
B 644.4
(-2.2)
P 		3803.8
(2.7)
P 		3981
(3)
P 		129.1
(-3)
P 		3852
C 719.3
(-2.1)
P 		3778.5
(2.4)
P 		4200.9
(3)
P 		135.6
(-3)
A 		4065
avr 681.6
(-2.2) 		3826.6
(2.4) 		4206.1
(3) 		137.2
(-3) 		4069

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2953
1 2 3 4 5 6 range
A 714.5
(-2.8)
P 		3421.1
(3)
P 		2079.5
(0.1)
P 		2666.2
(1.4)
P 		2230.7
(0.5)
P 		602.4
(-3)
P 		2819
B 625.5
(-3)
P 		3368.7
(3)
P 		1807.8
(-0.4)
P 		2833.9
(1.8)
P 		2303.5
(0.7)
P 		662.7
(-2.9)
P 		2743
C 516.2
(-3)
P 		3469.2
(3)
P 		2235.2
(0.5)
P 		2766.9
(1.6)
P 		1902.9
(-0.2)
P 		645.8
(-2.7)
P 		2953
avr 618.7
(-3) 		3419.7
(3) 		2040.8
(0) 		2755.7
(1.6) 		2145.7
(0.3) 		637
(-3) 		2801
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1443
1 2 3 4 range
A 248
(-1.8)
P 		846
(1.3)
P 		1159.8
(3)
P 		21.5
(-3)
A 		1138
B 205.5
(-1.8)
P 		939.5
(3)
P 		922.5
(2.9)
P 		27.5
(-3)
P 		912
C 238.1
(-2.1)
P 		1086.3
(1.4)
P 		1464.1
(3)
P 		22.9
(-3)
A 		1441
avr 230.5
(-1.9) 		957.3
(1.8) 		1182.1
(3) 		24
(-3) 		1158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1085
1 2 3 4 5 6 range
A 131.7
(-3)
P 		1216.7
(3)
P 		452.9
(-1.2)
P 		676.2
(0)
P 		673.1
(-0)
P 		146.7
(-2.9)
P 		1085
B 217.7
(-3)
P 		1121.3
(3)
P 		439
(-1.5)
P 		750.6
(0.5)
P 		935.9
(1.8)
P 		247.1
(-2.8)
P 		904
C 191.3
(-3)
P 		1058.6
(3)
P 		568.9
(-0.4)
P 		556.4
(-0.5)
P 		615.8
(-0.1)
P 		216.2
(-2.8)
P 		867
avr 180.2
(-3) 		1132.2
(3) 		486.9
(-1.1) 		661.1
(0) 		741.6
(0.5) 		203.3
(-2.9) 		952
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182966_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16018
Sequence Type Exemplar sequence
Representative Public ID ZK154.1 NCBI
Target Description ZK154.1 /REP_DB=WormBase Gene ID /WP=CE15255 /TR=Q94312 /GB=AAB09093.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076913(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076913 NCBI Caenorhabditis elegans ZK154.1 (ZK154.1) mRNA, complete cds. 11/11 None
GENEFINDER00000014402 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7779565:7780459:1 11/11 None
ZK154.1 ENSEMBL cdna:known chromosome:CEL140:X:7779565:7780482:1 gene:ZK154.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014393 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7777206-7780458(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK154.1
Entrez Gene 181038 Entrez gene
SwissProt Q94312 EMBL-EBI
WormBase CE31266 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB09093 Hypothetical protein ZK154.1 [Caenorhabditis elegans] ref|NP_509314.2| ZK154.1 [Caenorhabditis elegans] 1.0E-118
blast CAE70276 Hypothetical protein CBG16788 [Caenorhabditis briggsae] 1.0E-109
Sequence
Target Sequence 
>C. ELEGANS:182966_AT
tggtaatagcgtgtcttcttcctactgttgtctattcggcagttcaatgttatgttggcc
agaaattattctcatacgagtccacaaatgcgatctgtgccaaattcatcccatatacgt
gtgcggtgcaatgcgaatggcgcaagcaatgtaatgaacatacgtcgttctccactttcc
gcggacgtcgcactttcgtttctggccttctcctcaactcgaaatccttgatggttttgt
gttgcgcttcattggctactagagtggagacagacagcagcggtcgtgaaaagtgtatct
ggagagacaccgaatccatttccgtccttggtccatccatcagaaccaatccggtgttgg
caccaaaccactacattcgtgacgttaaaatggaacgcgacggaagctcccgtgttgatg
taaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTAATAGCGTGTCTTCTTCCTAC 578 551 155 Antisense
CTTCTTCCTACTGTTGTCTATTCGG 579 221 169 Antisense
TCTGTGCCAAATTCATCCCATATAC 91 609 248 Antisense
TCATCCCATATACGTGTGCGGTGCA 336 619 260 Antisense
TGAACATACGTCGTTCTCCACTTTC 482 573 309 Antisense
ATCCTTGATGGTTTTGTGTTGCGCT 13 39 378 Antisense
TTGTGTTGCGCTTCATTGGCTACTA 216 707 391 Antisense
GAGAGACACCGAATCCATTTCCGTC 335 395 456 Antisense
TGGTCCATCCATCAGAACCAATCCG 280 551 483 Antisense
GGCACCAAACCACTACATTCGTGAC 164 535 513 Antisense
CGGAAGCTCCCGTGTTGATGTAACA 204 243 555 Antisense
Sequence Source Affymetrix Proprietary Database