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[182965_at]

Description F38A5.2 /REP_DB=WormBase Gene ID /WP=CE10030 /TR=Q94217 /GB=AAB09147.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 07      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 75      6grp_total > 08      4grp_total > 53      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 448
1 2 3 4 range
A 912.5
(3)
P 		768.6
(-0.5)
P 		755
(-0.8)
P 		663.2
(-3)
P 		249
B 1001.1
(3)
P 		894.9
(0.8)
P 		735.5
(-2.6)
P 		714
(-3)
P 		287
C 878.8
(0.9)
P 		1036.9
(3)
P 		987.5
(2.3)
P 		589.4
(-3)
P 		448
avr 930.8
(3) 		900.1
(2.3) 		826
(0.7) 		655.5
(-3) 		275

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 527
1 2 3 4 5 6 range
A 1160.8
(3)
P 		858.6
(-0.7)
P 		896.2
(-0.3)
P 		796.1
(-1.5)
P 		704.7
(-2.6)
P 		675.8
(-3)
P 		485
B 1068.8
(3)
P 		776.5
(-1.1)
P 		695.5
(-2.2)
P 		887.4
(0.5)
P 		761.8
(-1.3)
P 		636.5
(-3)
P 		432
C 1008.9
(3)
P 		767.3
(-0.9)
P 		837.4
(0.3)
P 		931.5
(1.8)
P 		634.2
(-3)
P 		745.3
(-1.2)
P 		375
avr 1079.5
(3) 		800.8
(-1.2) 		809.7
(-1.1) 		871.7
(-0.2) 		700.2
(-2.8) 		685.9
(-3) 		394
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 247
1 2 3 4 range
A 332.2
(3)
P 		166.8
(-1.2)
P 		197.4
(-0.4)
P 		97.1
(-3)
P 		235
B 319.3
(3)
P 		221
(-0.5)
P 		170.4
(-2.3)
P 		152.2
(-3)
P 		167
C 290.9
(1.7)
P 		298.1
(1.9)
P 		344.2
(3)
P 		99.4
(-3)
P 		245
avr 314.1
(3) 		228.6
(0.4) 		237.3
(0.7) 		116.2
(-3) 		198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 214
(-0.9)
P 		305.4
(3)
P 		195.2
(-1.7)
P 		201.9
(-1.4)
P 		212.6
(-1)
P 		164.5
(-3)
P 		141
B 371.9
(3)
P 		258.5
(-0.4)
P 		168.9
(-3)
P 		235.1
(-1)
P 		309.5
(1.2)
P 		237.4
(-1)
P 		203
C 374
(3)
P 		234.1
(-1.5)
P 		213.1
(-2.2)
P 		187.3
(-3)
P 		205.2
(-2.4)
P 		249.5
(-1)
P 		187
avr 320
(3) 		266
(0.5) 		192.4
(-3) 		208.1
(-2.3) 		242.4
(-0.6) 		217.1
(-1.8) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182965_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10483
Sequence Type Exemplar sequence
Representative Public ID F38A5.2 NCBI
Target Description F38A5.2 /REP_DB=WormBase Gene ID /WP=CE10030 /TR=Q94217 /GB=AAB09147.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068603(11), NM_068604(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068603 NCBI Caenorhabditis elegans F38A5.2a (F38A5.2) mRNA, complete cds. 11/11 None
NM_068604 NCBI Caenorhabditis elegans F38A5.2b (F38A5.2) mRNA, complete cds. 11/11 None
SNAP00000010563 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6583654:6585384:-1 11/11 None
GENEFINDER00000010583 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6583490:6585384:-1 11/11 None
F38A5.2a ENSEMBL cdna:known chromosome:CEL140:IV:6582672:6585384:-1 gene:F38A5.2 11/11 None
F38A5.2b.2 ENSEMBL cdna:known chromosome:CEL140:IV:6583658:6585555:-1 gene:F38A5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6583659-6585584(-) 100.0 100.0
Public Domain and Genome References
Ensembl F38A5.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP40536 Hypothetical protein F38A5.2a [Caenorhabditis elegans] ref|NP_501004.2| F38A5.2a [Caenorhabditis elegans] 0.0
blast T29896 hypothetical protein F38A5.2 - Caenorhabditis elegans 0.0
blast AAP40537 Hypothetical protein F38A5.2b [Caenorhabditis elegans] ref|NP_501005.2| F38A5.2b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002816 EMBL-EBI TraB determinant 3.6E-15
Pfam IPR002816 EMBL-EBI TraB determinant 4.1E-18
Pfam IPR002816 EMBL-EBI TraB determinant 3.6E-15
Pfam IPR002816 EMBL-EBI TraB determinant 4.1E-18
Sequence
Target Sequence 
>C. ELEGANS:182965_AT
tcgtgtagttctcggtgatcgtcctattcaagttacacttcaacgtgcactggcttctct
ctccatctggcaaaaaattcgcttcttcttccacgttgcattttcacatcgtgagaagat
aactgcagaagaggtggaacgatgcaagcaacgtgaccttctggagcaacttctcgccga
gatggctgatgatttcccacaactatcccaaatctttgtggaagagcgtgatgcctacat
gacgcatgctttgcatatgctcgtacaccggaactcagtcgaaaaacgtgcacaatggct
tcgtggaacaactgggcaacaatttcaaccgttgacagttgttgctgtcgttggaatcgg
acatactccaggaattgttaacaaatggaatacaaatattgattttgatccacttatgaa
catcccaccaccaagcctcggaacaaaggttttctccactggcgtccgtattgttgtctg
gggatctttgggatatttggcttatcgtggaggacgtgctatcttcaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTGTAGTTCTCGGTGATCGTCCT 615 605 849 Antisense
GATCGTCCTATTCAAGTTACACTTC 342 417 865 Antisense
TACACTTCAACGTGCACTGGCTTCT 159 643 882 Antisense
GCTTCTCTCTCCATCTGGCAAAAAA 650 305 901 Antisense
GGCAAAAAATTCGCTTCTTCTTCCA 141 527 917 Antisense
TCTTCCACGTTGCATTTTCACATCG 638 617 935 Antisense
GATGCAAGCAACGTGACCTTCTGGA 245 413 989 Antisense
TGATGATTTCCCACAACTATCCCAA 638 565 1035 Antisense
ATATGCTCGTACACCGGAACTCAGT 613 19 1103 Antisense
TGATCCACTTATGAACATCCCACCA 185 567 1254 Antisense
CGTGGAGGACGTGCTATCTTCAATC 358 243 1354 Antisense
Sequence Source Affymetrix Proprietary Database