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[182964_s_at]

Description R09A1.1 /REP_DB=WormBase Gene ID /WP=CE18127 /TR=O61931 /GB=AAC17775.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 79      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 84      6grp_total > 79      4grp_total > 54      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 466
1 2 3 4 range
A 647.7
(3)
P 		594.2
(2.1)
P 		417
(-1)
P 		304.3
(-3)
P 		343
B 770.5
(3)
P 		482.3
(-1)
P 		399.8
(-2.2)
P 		339.7
(-3)
P 		431
C 615
(3)
P 		412.6
(-1.8)
P 		415.1
(-1.7)
P 		361
(-3)
P 		254
avr 677.7
(3) 		496.4
(-0.2) 		410.6
(-1.7) 		335
(-3) 		343

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 497
1 2 3 4 5 6 range
A 578.8
(-0.3)
P 		548
(-0.7)
P 		355.4
(-3)
P 		379.5
(-2.7)
P 		594.8
(-0.1)
P 		852.7
(3)
P 		497
B 543.7
(-0.2)
P 		538.1
(-0.3)
P 		394.4
(-3)
P 		443.2
(-2.1)
P 		526.5
(-0.5)
P 		710.2
(3)
P 		316
C 598.8
(0.7)
P 		533.4
(-0.5)
P 		611.2
(1)
P 		399.5
(-3)
P 		719.4
(3)
P 		588.7
(0.5)
P 		320
avr 573.8
(0.2) 		539.8
(-0.4) 		453.7
(-2.1) 		407.4
(-3) 		613.6
(1) 		717.2
(3) 		310
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 235.8
(3)
P 		129
(-0.3)
P 		109
(-1)
P 		44.5
(-3)
P 		191
B 245.7
(3)
P 		119.1
(-1.4)
P 		92.6
(-2.3)
P 		72.4
(-3)
P 		173
C 203.6
(3)
P 		118.6
(-0.6)
P 		144.7
(0.5)
P 		60.9
(-3)
P 		143
avr 228.4
(3) 		122.2
(-0.8) 		115.4
(-1) 		59.3
(-3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 106.7
(-1.6)
P 		194.9
(2.4)
P 		77.4
(-3)
P 		96.3
(-2.1)
P 		179.5
(1.7)
P 		207.6
(3)
P 		130
B 189.2
(0.3)
P 		179.1
(-0)
P 		95.8
(-3)
P 		117.4
(-2.2)
P 		213.9
(1.2)
P 		264.8
(3)
P 		169
C 221.9
(2.6)
P 		162.8
(0.2)
P 		155.6
(-0)
P 		80.3
(-3)
P 		232.8
(3)
P 		197.1
(1.6)
P 		153
avr 172.6
(0.6) 		178.9
(0.9) 		109.6
(-2.4) 		98
(-3) 		208.7
(2.3) 		223.2
(3) 		125
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182964_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15864
Sequence Type Exemplar sequence
Representative Public ID R09A1.1 NCBI
Target Description R09A1.1 /REP_DB=WormBase Gene ID /WP=CE18127 /TR=O61931 /GB=AAC17775.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070961(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070961 NCBI Caenorhabditis elegans R09A1.1 (R09A1.1) mRNA, complete cds. 11/11 None
SNAP00000044509 ENSEMBL cdna:SNAP chromosome:CEL140:V:1008643:1017903:1 11/11 None
GENEFINDER00000044511 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1008643:1017903:1 11/11 None
R09A1.1 ENSEMBL cdna:known chromosome:CEL140:V:1008633:1018179:1 gene:R09A1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1008642-1017903(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R09A1.1
Entrez Gene 178602 Entrez gene
SwissProt O61931 EMBL-EBI
WormBase CE30106 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17775 Hypothetical protein R09A1.1 [Caenorhabditis elegans] ref|NP_503362.2| R09A1.1 [Caenorhabditis elegans] 0.0
blast CAE57865 Hypothetical protein CBG00904 [Caenorhabditis briggsae] 0.0
blast CAE71045 Hypothetical protein CBG17887 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 3.0E-11
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 4.0E-115
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 4.0E-115
Sequence
Target Sequence 
>C. ELEGANS:182964_S_AT
agtacctgttcgaggagcgcgtttgcattgaggaacgatgccttaaaatcgacacctcat
tccaaccatcaataacgtatatcgtagttaccaagcgacatcatactcaattcttcctag
aagatccgagtcaaggatacgaatcacagggttacaatgtcctaccgggaactttaatcg
aagacgctgttaccaccaacaagtactacgatttcttcctctccacacagatcggcaatg
aaggatgtttccgtccaactcattactatgtgcttcacgatacgtggaccgggaagcccg
actcgttctggccgactgtcacgcatgcgttgacctataatttctgtagatcaacgacca
ctgtcgcgttgccagcgccggtgttgtatgctcatttggcggcgaaacgtgccaaggaga
cgctggatggaatcaatacgtacaagtcagtaaataatatctactgcgacctcgaatcat
tcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTACCTGTTCGAGGAGCGCGTTTG 93 59 2882 Antisense
TTAAAATCGACACCTCATTCCAACC 142 683 2924 Antisense
GACATCATACTCAATTCTTCCTAGA 243 371 2978 Antisense
GACGCTGTTACCACCAACAAGTACT 87 379 3064 Antisense
ACAAGTACTACGATTTCTTCCTCTC 144 113 3080 Antisense
TTTCCGTCCAACTCATTACTATGTG 59 671 3129 Antisense
TCACGATACGTGGACCGGGAAGCCC 710 623 3156 Antisense
GACTGTCACGCATGCGTTGACCTAT 290 375 3195 Antisense
GATCAACGACCACTGTCGCGTTGCC 224 421 3230 Antisense
TGTATGCTCATTTGGCGGCGAAACG 409 559 3266 Antisense
TCTACTGCGACCTCGAATCATTCGG 700 611 3341 Antisense
Sequence Source Affymetrix Proprietary Database