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[182963_at]

Description F23D12.1 /REP_DB=WormBase Gene ID /WP=CE05699 /TR=Q19757 /GB=CAA94913.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 116.7
(-0.5)
M 		119.5
(0.2)
A 		130
(3)
A 		107.3
(-3)
A 		23
B 140.1
(-0.4)
A 		135.6
(-0.7)
A 		103.4
(-3)
A 		188.5
(3)
P 		85
C 164.8
(-0.9)
A 		117.7
(-2.4)
A 		98.9
(-3)
A 		283.6
(3)
P 		185
avr 140.5
(-0.8) 		124.3
(-2) 		110.8
(-3) 		193.1
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 130.9
(-0.2)
A 		17.6
(-3)
A 		231.2
(2.3)
A 		107.4
(-0.8)
A 		258.4
(3)
A 		67.4
(-1.8)
A 		241
B 130.4
(0.8)
A 		160.7
(1.8)
P 		175.5
(2.3)
A 		114.1
(0.2)
A 		17.6
(-3)
A 		197.7
(3)
A 		180
C 160.6
(2.1)
M 		138.3
(1.2)
A 		117.8
(0.4)
A 		31.7
(-3)
A 		182.4
(3)
A 		143.7
(1.5)
P 		151
avr 140.6
(0.7) 		105.5
(-1.6) 		174.8
(3) 		84.4
(-3) 		152.8
(1.5) 		136.3
(0.4) 		90
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 42.5
(3)
M 		25.9
(-0.7)
A 		34
(1.1)
A 		15.7
(-3)
A 		27
B 44.7
(3)
A 		33.5
(-0.2)
A 		24
(-3)
A 		40.2
(1.7)
P 		21
C 54.5
(3)
A 		33.8
(-3)
A 		34.5
(-2.8)
A 		47.8
(1.1)
P 		21
avr 47.2
(3) 		31.1
(-2.9) 		30.8
(-3) 		34.6
(-1.6) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 24.1
(-1.5)
A 		6.3
(-3)
A 		50.4
(0.7)
A 		27.2
(-1.3)
A 		78
(3)
A 		16.4
(-2.2)
A 		72
B 45.4
(0.5)
A 		53.5
(1.2)
P 		42.6
(0.2)
A 		30.2
(-0.9)
A 		7.1
(-3)
A 		73.7
(3)
A 		67
C 59.5
(3)
M 		42.2
(1)
A 		30
(-0.3)
A 		6.4
(-3)
A 		59
(2.9)
A 		48.1
(1.7)
P 		53
avr 43
(1.9) 		34
(-0.1) 		41
(1.4) 		21.3
(-3) 		48
(3) 		46.1
(2.6) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182963_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17550
Sequence Type Exemplar sequence
Representative Public ID F23D12.1 NCBI
Target Description F23D12.1 /REP_DB=WormBase Gene ID /WP=CE05699 /TR=Q19757 /GB=CAA94913.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078001(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078001 NCBI Caenorhabditis elegans F23D12.1 (F23D12.1) mRNA, complete cds. 11/11 None
GENEFINDER00000042577 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14423844:14428024:-1 10/11 None
F23D12.1 ENSEMBL cdna:known chromosome:CEL140:X:14423844:14428024:-1 gene:F23D12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042568 4/11 Cross Hyb Matching Probes None
SNAP00000042569 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14423843-14428024(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23D12.1
Entrez Gene 184895 Entrez gene
SwissProt Q19757 EMBL-EBI
WormBase CE05699 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94913 Hypothetical protein F23D12.1 [Caenorhabditis elegans] ref|NP_510402.1| F23D12.1 [Caenorhabditis elegans] 1.0E-153
blast CAA94913 Hypothetical protein F23D12.1 [Caenorhabditis elegans] ref|NP_510402.1| F23D12.1 [Caenorhabditis elegans] 1.0E-152
blast CAE69861 Hypothetical protein CBG16191 [Caenorhabditis briggsae] 6.0E-84
blast CAE69861 Hypothetical protein CBG16191 [Caenorhabditis briggsae] 2.0E-62
blast CAB03980 Hypothetical protein C49F5.7 [Caenorhabditis elegans] ref|NP_510008.2| C49F5.7 [Caenorhabditis elegans] 8.0E-9
blast CAB03980 Hypothetical protein C49F5.7 [Caenorhabditis elegans] ref|NP_510008.2| C49F5.7 [Caenorhabditis elegans] 1.0E-8
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510402.1 4 35-57,89-111,123-145,160-182
F23D12.1 4 35-57,89-111,123-145,160-182
GENEFINDER00000042577 4 35-57,101-120,132-151,161-183
Sequence
Target Sequence 
>C. ELEGANS:182963_AT
actattcgcttctggtttttcattccacattttatatttagaataatttgtctttcactt
atctgtcttgttgatgcttggcttattttccgtgcagcaagtggaacggatgatatggtt
tcgtacattacaccaatagttatcattgctgtagttgcagttggcgtgatttatgcaact
gctcgtcgacttccgccactccgacacaatcaaaaccagtacgttgtcaatgagacgcat
cctcctgcacctggaaatcctaacgaagaaatgattcaaaaatcacttcaagattttttg
actgtaccaaagaccgaagaaaaaattcgtcaactagttgcattggcaactgaagtccct
cttaaagatgtcggaatcacgttttcatggaaagaagtactcgatgagcaacaacaggaa
gagtttaacattttcattgcaaacgtcctcacttcatacttcaaggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTATTCGCTTCTGGTTTTTCATTC 145 103 376 Antisense
ATTTGTCTTTCACTTATCTGTCTTG 95 19 421 Antisense
TCTGTCTTGTTGATGCTTGGCTTAT 279 609 437 Antisense
TGCTTGGCTTATTTTCCGTGCAGCA 273 579 450 Antisense
ATTTATGCAACTGCTCGTCGACTTC 158 15 544 Antisense
CGTTGTCAATGAGACGCATCCTCCT 551 247 597 Antisense
CCTCCTGCACCTGGAAATCCTAACG 263 267 616 Antisense
TGCATTGGCAACTGAAGTCCCTCTT 484 577 714 Antisense
GATGTCGGAATCACGTTTTCATGGA 258 409 742 Antisense
ACATTTTCATTGCAAACGTCCTCAC 339 105 803 Antisense
ACGTCCTCACTTCATACTTCAAGGT 363 93 818 Antisense
Sequence Source Affymetrix Proprietary Database